Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   VP_RS00725 Genome accession   NC_004603
Coordinates   156643..157368 (-) Length   241 a.a.
NCBI ID   WP_005459005.1    Uniprot ID   Q87TC3
Organism   Vibrio parahaemolyticus RIMD 2210633     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 151643..162368
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VP_RS00700 (VP0142) - 152762..153253 (+) 492 WP_005458943.1 type II secretion system protein M -
  VP_RS00705 (VP0143) - 153255..154016 (+) 762 WP_005459010.1 type II secretion system protein N -
  VP_RS00710 (VP0144) cysQ 154302..155129 (-) 828 WP_005458987.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  VP_RS00715 (VP0145) nudE 155171..155740 (-) 570 WP_005459019.1 ADP compounds hydrolase NudE -
  VP_RS00720 (VP0146) nfuA 155961..156545 (-) 585 WP_005458964.1 Fe-S biogenesis protein NfuA -
  VP_RS00725 (VP0147) comF 156643..157368 (-) 726 WP_005459005.1 amidophosphoribosyltransferase Machinery gene
  VP_RS00730 (VP0148) bioH 157453..158220 (+) 768 WP_005489494.1 pimeloyl-ACP methyl ester esterase BioH -
  VP_RS00735 (VP0149) - 158344..158808 (+) 465 WP_005459035.1 hypothetical protein -
  VP_RS00740 (VP0150) - 158944..161265 (-) 2322 WP_005478620.1 Tex family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27770.91 Da        Isoelectric Point: 8.9991

>NTDB_id=22741 VP_RS00725 WP_005459005.1 156643..157368(-) (comF) [Vibrio parahaemolyticus RIMD 2210633]
MLSHHWQNIMHRVLSSQCGLCRFPIQATAQPNALRWCDHCYQYLTPVKRCQRCGLSLKAEEANIESICGECLSEPPPWQR
LFTLGDYDFPLSREVQRFKDHGQTWHVRALTQLLAQRISTPAPLITTVPLHWQRYFYRGFNQSDILARHLAGHLNVRFDN
HVFRRVKHVQSQRGYKKSSREQNLKGAFTLNQPPKYNHVAIVDDVVTTGSTVRQLCHLLLEVGVETVDIYCICRTPAPGA
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=22741 VP_RS00725 WP_005459005.1 156643..157368(-) (comF) [Vibrio parahaemolyticus RIMD 2210633]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTGCTCAGCAGTCAATGCGGTTTATGTCGCTTCCCGATTCAGGC
TACCGCTCAACCCAATGCGCTGCGTTGGTGTGATCACTGTTATCAATATCTTACGCCAGTAAAACGCTGCCAACGTTGTG
GATTGAGCTTAAAAGCAGAGGAAGCGAATATAGAGAGTATTTGCGGCGAGTGCCTCTCCGAGCCTCCACCGTGGCAACGG
CTATTTACCTTGGGAGACTACGACTTTCCGCTATCTCGAGAAGTACAACGCTTCAAAGATCACGGACAAACATGGCATGT
TCGCGCTTTAACGCAATTGCTTGCCCAGCGCATTTCAACTCCCGCTCCGCTTATCACCACAGTGCCATTGCACTGGCAAC
GCTACTTTTATCGAGGCTTTAATCAGAGCGACATACTGGCGCGACATTTGGCTGGTCACCTTAATGTGAGGTTTGATAAT
CACGTGTTTCGCCGCGTAAAACACGTCCAGTCGCAGCGTGGGTACAAGAAATCCAGCCGAGAACAGAATTTAAAAGGCGC
TTTCACCTTAAATCAGCCACCAAAGTATAACCACGTCGCAATCGTAGATGATGTGGTCACGACGGGAAGCACGGTTCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAACCGTCGATATTTACTGCATCTGCAGAACCCCTGCTCCTGGTGCT
GTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(146-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87TC3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

72.199

100

0.722
  comF Vibrio cholerae strain A1552

49.16

98.755

0.485

Multiple sequence alignment