Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   B9W14_RS09765 Genome accession   NZ_CP020953
Coordinates   2163776..2165638 (+) Length   620 a.a.
NCBI ID   WP_032079364.1    Uniprot ID   A0A2U8DQJ1
Organism   Clostridium drakei strain SL1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2158776..2170638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9W14_RS09750 (B9W14_09675) - 2159465..2160613 (-) 1149 WP_052038052.1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain -
  B9W14_RS09755 (B9W14_09680) - 2160831..2161274 (-) 444 WP_032079366.1 MarR family transcriptional regulator -
  B9W14_RS09760 (B9W14_09685) - 2161527..2163779 (+) 2253 WP_032079365.1 ABC transporter ATP-binding protein -
  B9W14_RS09765 (B9W14_09690) rcrQ 2163776..2165638 (+) 1863 WP_032079364.1 ABC transporter ATP-binding protein Regulator
  B9W14_RS09770 (B9W14_09695) - 2165893..2166051 (+) 159 WP_007061385.1 zinc-ribbon domain-containing protein -
  B9W14_RS09775 (B9W14_09700) - 2166297..2167211 (+) 915 WP_032079363.1 phosphate ABC transporter substrate-binding protein -
  B9W14_RS09780 (B9W14_09705) pstC 2167271..2168140 (+) 870 WP_032079362.1 phosphate ABC transporter permease subunit PstC -
  B9W14_RS09785 (B9W14_09710) pstA 2168154..2168984 (+) 831 WP_032079361.1 phosphate ABC transporter permease PstA -
  B9W14_RS09790 (B9W14_09715) - 2168987..2169736 (+) 750 WP_032079360.1 phosphate ABC transporter ATP-binding protein -
  B9W14_RS09795 (B9W14_09720) - 2169779..2170249 (+) 471 WP_032079359.1 HAD hydrolase family protein -

Sequence

Protein


Download         Length: 620 a.a.        Molecular weight: 69187.23 Da        Isoelectric Point: 6.9006

>NTDB_id=227344 B9W14_RS09765 WP_032079364.1 2163776..2165638(+) (rcrQ) [Clostridium drakei strain SL1]
MSDRKIENKRQGGFGGGHMGGMGNGEKAKNFKTTMNKLLQYLKPYRLSIIIVIIFAIGSAAFSIIGPKILGKATTKLFEG
LVNKVMGVEGAAIDFSYIGYIAILLLVLYIVSAVFSIIQGYIVSGVAQKVSYNFRKEIDEKINRMPLKYFDKKTHGEVLS
RITNDVDTVSQSLNQSMSQIITSVVTIIGVLIMMLSISWQMTLVALLILPVSMILITWVIKKSQKYFKSQQEYLGHVNGQ
VEEIYSGHNIVKAFNREEEAVKNFEEVNDILYSSAWKSQFLSGMMMPIMTFIGNIGYVAVSILGGWLAIKKTIEVGDILS
FVQYVRSFTQPISQVAQIANVLQSTAAAAERVFEFLEEEEEVKESENPVKLQEVKGEVTFKDVQFGYNSDKMIINNFGAH
IKPGQKVAIVGPTGAGKTTIVKLLMRFYDLNSGSILIDGHDIKDFTREDLRSMFGMVLQDTWLFNGEIMENIRYGKLDAL
DKDVVEAAKSAHVHHFVKTLPKGYNMELNEEASNVSQGQKQLLTIARALLKDPKILILDEATSSIDTRTEVLIQKAMENL
MKGRTSFIIAHRLSTIRDADLILVMNDGDIVEQGSHQELLEANGFYASLYNSQFENAYAS

Nucleotide


Download         Length: 1863 bp        

>NTDB_id=227344 B9W14_RS09765 WP_032079364.1 2163776..2165638(+) (rcrQ) [Clostridium drakei strain SL1]
ATGAGTGATAGAAAAATAGAAAATAAGAGACAAGGTGGCTTTGGCGGTGGTCATATGGGAGGTATGGGAAATGGTGAAAA
GGCGAAGAATTTCAAAACTACTATGAATAAATTGTTGCAATACTTAAAACCATATAGGTTATCAATAATTATTGTAATTA
TTTTTGCAATAGGAAGTGCAGCTTTTTCTATAATAGGTCCTAAAATTTTAGGTAAGGCAACGACCAAGCTCTTTGAAGGA
TTGGTAAATAAGGTAATGGGGGTAGAAGGTGCAGCCATTGACTTTAGTTATATAGGGTATATTGCAATCTTGCTTCTTGT
ATTATATATTGTTAGTGCTGTGTTTTCAATTATACAAGGATATATAGTCTCAGGAGTAGCACAAAAGGTATCTTATAATT
TCAGAAAAGAAATTGATGAAAAGATTAATCGTATGCCACTTAAGTACTTTGATAAGAAGACACATGGAGAAGTACTATCT
AGGATTACTAATGATGTAGATACTGTGAGTCAATCATTAAATCAAAGTATGTCACAAATAATAACATCAGTTGTTACAAT
AATAGGTGTATTAATTATGATGTTATCAATAAGTTGGCAAATGACGTTAGTTGCACTTTTAATATTGCCAGTATCAATGA
TTTTAATTACATGGGTAATAAAAAAATCACAAAAGTATTTTAAATCTCAACAGGAATATTTAGGACATGTTAATGGACAA
GTAGAAGAAATTTATAGTGGTCATAATATAGTAAAAGCTTTTAATAGAGAAGAGGAAGCGGTTAAAAACTTTGAAGAAGT
TAATGATATACTTTATAGTTCAGCGTGGAAATCTCAATTTTTATCTGGGATGATGATGCCAATTATGACTTTCATTGGTA
ATATAGGTTATGTAGCTGTATCCATTTTAGGTGGATGGCTTGCAATAAAGAAAACTATTGAAGTTGGAGATATTTTATCC
TTTGTTCAGTATGTTAGAAGTTTTACACAGCCAATATCTCAAGTAGCTCAAATAGCTAATGTACTTCAATCCACAGCAGC
TGCTGCAGAAAGGGTTTTTGAATTTTTAGAAGAGGAAGAAGAAGTAAAAGAATCAGAAAATCCAGTTAAACTTCAAGAGG
TTAAAGGGGAAGTTACTTTTAAGGATGTTCAATTTGGATATAACTCTGATAAAATGATAATAAATAATTTCGGAGCTCAT
ATTAAACCTGGTCAAAAAGTAGCTATAGTAGGACCAACTGGAGCAGGAAAGACCACAATAGTTAAACTTTTAATGCGTTT
TTATGATTTAAATAGTGGATCTATATTAATTGATGGACATGATATAAAAGATTTTACTAGAGAAGATTTGCGTAGTATGT
TTGGTATGGTACTTCAAGATACTTGGTTATTTAATGGTGAAATAATGGAGAATATACGTTATGGTAAACTTGATGCTTTG
GATAAAGACGTTGTTGAAGCAGCTAAGTCAGCTCATGTTCACCATTTTGTAAAAACCTTGCCAAAGGGATATAACATGGA
ATTAAATGAAGAAGCAAGCAATGTATCTCAAGGACAAAAGCAGCTATTAACCATTGCTCGTGCACTTTTAAAAGATCCTA
AAATATTAATACTTGATGAAGCTACAAGTTCTATTGATACTCGTACAGAGGTGCTTATTCAAAAGGCTATGGAAAACCTA
ATGAAAGGAAGAACAAGCTTTATTATTGCTCATAGATTATCAACAATACGTGATGCAGATTTGATACTTGTAATGAATGA
TGGAGATATTGTAGAACAAGGTAGTCATCAAGAATTATTAGAGGCAAATGGTTTTTATGCTTCACTTTACAATAGTCAAT
TTGAAAATGCTTATGCCTCATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(395-543)

ABC transporter transmembrane region (ABC_membrane)

(49-331)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2U8DQJ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

52.041

94.839

0.494

Multiple sequence alignment