Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   B9L64_RS01060 Genome accession   NZ_CP020915
Coordinates   206714..207493 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain 50-1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 201714..212493
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9L64_RS01040 trmFO 202407..203714 (+) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  B9L64_RS01045 xerC 203782..204696 (+) 915 WP_003231988.1 tyrosine recombinase XerC -
  B9L64_RS01050 clpQ 204709..205254 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  B9L64_RS01055 hslU 205271..206674 (+) 1404 WP_003245556.1 HslU--HslV peptidase ATPase subunit -
  B9L64_RS01060 codY 206714..207493 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  B9L64_RS01065 flgB 207873..208262 (+) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  B9L64_RS01070 flgC 208262..208714 (+) 453 WP_003245521.1 flagellar basal body rod protein FlgC -
  B9L64_RS01075 fliE 208725..209045 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  B9L64_RS01080 fliF 209091..210701 (+) 1611 WP_010886506.1 flagellar basal-body MS-ring/collar protein FliF -
  B9L64_RS01085 fliG 210714..211730 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  B9L64_RS01090 fliH 211723..212475 (+) 753 WP_003244804.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=227051 B9L64_RS01060 WP_003220850.1 206714..207493(+) (codY) [Bacillus subtilis strain 50-1]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=227051 B9L64_RS01060 WP_003220850.1 206714..207493(+) (codY) [Bacillus subtilis strain 50-1]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCAATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment