Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   B4U37_RS15820 Genome accession   NZ_CP020880
Coordinates   3050578..3052923 (-) Length   781 a.a.
NCBI ID   WP_088018969.1    Uniprot ID   -
Organism   Sutcliffiella horikoshii strain 20a     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3045578..3057923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B4U37_RS15805 (B4U37_15785) dtd 3047011..3047451 (-) 441 WP_088018967.1 D-aminoacyl-tRNA deacylase -
  B4U37_RS15810 (B4U37_15790) - 3047472..3049670 (-) 2199 WP_088018968.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  B4U37_RS15815 (B4U37_15795) - 3050051..3050563 (-) 513 WP_010195994.1 adenine phosphoribosyltransferase -
  B4U37_RS15820 (B4U37_15800) recJ 3050578..3052923 (-) 2346 WP_088018969.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  B4U37_RS15825 (B4U37_15805) - 3053119..3053439 (-) 321 WP_088018970.1 lipopolysaccharide assembly LapA domain-containing protein -
  B4U37_RS15830 (B4U37_15810) - 3053461..3054351 (-) 891 WP_088018971.1 cation diffusion facilitator family transporter -
  B4U37_RS15835 (B4U37_15815) secDF 3054469..3056718 (-) 2250 WP_088018972.1 protein translocase subunit SecDF -
  B4U37_RS15840 (B4U37_15820) - 3056895..3057176 (-) 282 WP_088018973.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 781 a.a.        Molecular weight: 88097.19 Da        Isoelectric Point: 4.7675

>NTDB_id=226852 B4U37_RS15820 WP_088018969.1 3050578..3052923(-) (recJ) [Sutcliffiella horikoshii strain 20a]
MLASKSRWNVSESNTELVDQLAESLDIAPLIATLLVNRGFDTIDAAKEFLYTNDQEFHDPFLMEDMDKLVERVNQAIAKE
EKILVFGDYDADGVSSTTVMVTALREVGALVDFYIPNRFTEGYGPNENAFKQAKENGYSVIITVDTGISALYEAKVAKEL
GVDLIITDHHEPGPELPDAYAIIHPKKETCSYPFDDLAGVGVAYKVAHALLGKNPEHLLDVAAIGTIADLVPLVGENRLL
ASKGIKKMQQTTRVGLKALLQKCGVELHTVTEETVGFSIGPRINAVGRLDNADPAVHLLMTNDLEEAKMLAEEMESYNKE
RQQIVTQITEEAIQQVEEKYPPEDNGFIIVEGTNWNAGVIGIVASRLVDRFYRPTIVLSFDEDKGLAKGSARSIAGFDLF
ENLSECRDILPHFGGHPMAAGMTVKIEDVNDLRQRMNQKALEILTEEDFTPITEVDIECTVGEVTLATIEQLEMLAPFGV
ANPKPKVLVKGVLPQQIRQIGNKSNHLKLVIEQEGSSLDCVGFGFGETYHHVSPGASLDVLGELSINEWNNFRKPQLFLK
DIRVTDWQLFDIRSIKQLNQTLNGIDKEKLHILYFNENTLEEINLHDELRPYASMFIENADMDLTGKYVVILDIPSEEEH
LSTLLQTSTPERIYASFYQKENHFFSTIPTREHFKWFYALLAKKGSFDLRKHAEDIAKHRGWSKETVDFISQVFFDLEFV
TIDKGFIALNHAAKKRDFEESPTYRKKQQQVMLENLFLYSSYKQLKVWFDQHLTKQCTVHS

Nucleotide


Download         Length: 2346 bp        

>NTDB_id=226852 B4U37_RS15820 WP_088018969.1 3050578..3052923(-) (recJ) [Sutcliffiella horikoshii strain 20a]
GTGTTAGCTTCTAAATCGAGATGGAATGTAAGTGAATCGAATACAGAGCTGGTTGATCAACTAGCAGAATCTTTGGATAT
TGCCCCTCTTATTGCTACCCTTTTGGTAAACAGAGGGTTTGACACGATAGATGCAGCAAAAGAATTTTTATATACAAATG
ATCAAGAGTTTCATGATCCTTTTTTAATGGAAGATATGGACAAGCTTGTAGAAAGAGTAAATCAAGCGATTGCAAAAGAA
GAGAAGATCCTTGTGTTTGGCGACTATGACGCAGATGGAGTCAGCTCTACCACCGTCATGGTGACTGCTTTGCGAGAAGT
CGGTGCACTGGTTGATTTTTATATCCCAAACCGCTTTACAGAAGGATACGGACCAAATGAAAATGCCTTCAAGCAAGCAA
AAGAAAACGGATATTCTGTCATTATCACAGTCGACACAGGAATCTCCGCCCTCTATGAGGCTAAAGTGGCGAAAGAACTA
GGGGTGGATCTTATCATCACCGATCACCATGAGCCAGGACCCGAATTGCCTGATGCTTATGCAATCATTCACCCTAAAAA
AGAAACATGCTCCTATCCATTTGATGATCTGGCTGGCGTTGGGGTTGCCTACAAGGTAGCACATGCACTACTAGGGAAAA
ACCCGGAGCACCTTCTTGATGTGGCGGCCATCGGAACTATTGCTGATTTGGTCCCGTTAGTCGGCGAGAATAGATTACTA
GCGTCTAAAGGTATCAAAAAGATGCAACAGACCACACGTGTCGGACTGAAGGCGCTTCTTCAAAAATGCGGAGTGGAATT
GCATACGGTAACAGAAGAGACAGTAGGGTTTTCGATCGGACCGAGAATCAATGCGGTGGGACGCCTGGATAATGCAGACC
CGGCAGTTCATCTTCTCATGACAAATGATCTGGAAGAAGCCAAAATGCTTGCGGAGGAAATGGAAAGTTACAACAAAGAG
AGACAGCAAATTGTGACCCAAATTACCGAAGAAGCCATTCAACAGGTGGAAGAGAAATACCCGCCTGAAGATAATGGTTT
TATTATTGTGGAGGGAACTAATTGGAATGCGGGAGTGATCGGGATTGTCGCATCACGCCTTGTGGATCGCTTTTACAGAC
CGACCATCGTACTTAGCTTTGATGAGGATAAAGGGTTGGCAAAAGGTTCTGCCCGTTCCATCGCAGGCTTTGATCTCTTT
GAAAACCTTTCGGAATGCCGGGATATTTTGCCTCATTTTGGAGGACATCCAATGGCAGCCGGGATGACTGTGAAAATAGA
AGATGTAAATGATCTCAGACAAAGAATGAATCAAAAGGCATTAGAAATCCTGACAGAAGAAGATTTTACGCCTATTACTG
AAGTGGATATCGAATGCACGGTGGGTGAGGTAACACTTGCTACAATAGAGCAGTTGGAAATGCTTGCCCCATTCGGTGTG
GCCAATCCGAAACCGAAAGTGCTAGTAAAAGGTGTACTGCCACAGCAAATTCGTCAGATTGGAAACAAAAGCAATCACCT
GAAATTAGTTATCGAACAGGAAGGAAGTTCCCTTGATTGCGTAGGTTTTGGCTTTGGGGAAACCTATCACCATGTCTCTC
CAGGGGCATCCCTTGACGTTTTAGGAGAGCTTTCTATAAATGAGTGGAACAATTTTCGTAAGCCGCAACTATTTTTAAAA
GATATCAGAGTGACAGATTGGCAGCTTTTTGATATCCGTTCCATTAAACAGTTAAATCAAACATTAAATGGAATAGATAA
GGAAAAACTCCACATCCTATATTTTAATGAAAATACTTTGGAAGAAATAAATCTCCATGATGAGTTACGACCATATGCAA
GTATGTTTATAGAGAATGCTGATATGGATTTGACAGGGAAGTATGTTGTAATCCTTGATATTCCATCTGAGGAAGAGCAC
CTGTCCACTTTATTACAAACCAGTACACCTGAGCGAATCTATGCTTCCTTCTATCAAAAGGAGAATCATTTCTTTTCTAC
CATCCCGACGAGGGAACACTTTAAATGGTTTTACGCATTACTTGCCAAAAAAGGATCATTTGATCTTAGAAAACATGCAG
AAGATATTGCCAAGCATCGAGGCTGGTCAAAAGAAACGGTAGATTTCATATCACAGGTGTTTTTTGACTTAGAATTTGTT
ACAATAGACAAGGGTTTTATCGCATTAAACCATGCAGCGAAAAAAAGGGACTTTGAAGAGTCTCCAACTTATCGTAAAAA
GCAACAGCAAGTGATGCTTGAAAACTTGTTTTTATATTCTTCATATAAACAATTAAAAGTGTGGTTTGATCAGCATCTAA
CCAAGCAATGCACTGTTCATTCATAG

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(315-438)

RecJ OB domain (RecJ_OB)

(455-561)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-769)

DHH family (DHH)

(82-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

54.429

99.744

0.543

Multiple sequence alignment