Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   B9C53_RS02055 Genome accession   NZ_CP020874
Coordinates   503445..504224 (-) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain GYL4     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 498445..509224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9C53_RS02025 (B9C53_02005) fliH 498489..499244 (-) 756 WP_038458013.1 flagellar assembly protein FliH -
  B9C53_RS02030 (B9C53_02010) fliG 499237..500253 (-) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  B9C53_RS02035 (B9C53_02015) fliF 500266..501876 (-) 1611 WP_038458010.1 flagellar basal-body MS-ring/collar protein FliF -
  B9C53_RS02040 (B9C53_02020) fliE 501919..502239 (-) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  B9C53_RS02045 (B9C53_02025) flgC 502250..502702 (-) 453 WP_007409776.1 flagellar basal body rod protein FlgC -
  B9C53_RS02050 (B9C53_02030) flgB 502702..503091 (-) 390 WP_038458008.1 flagellar basal body rod protein FlgB -
  B9C53_RS02055 (B9C53_02035) codY 503445..504224 (-) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  B9C53_RS02060 (B9C53_02040) hslU 504262..505665 (-) 1404 WP_007611413.1 HslU--HslV peptidase ATPase subunit -
  B9C53_RS02065 (B9C53_02045) hslV 505682..506227 (-) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  B9C53_RS02070 (B9C53_02050) xerC 506243..507160 (-) 918 WP_007409774.1 tyrosine recombinase XerC -
  B9C53_RS02075 (B9C53_02055) trmFO 507230..508537 (-) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=226741 B9C53_RS02055 WP_003154263.1 503445..504224(-) (codY) [Bacillus velezensis strain GYL4]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=226741 B9C53_RS02055 WP_003154263.1 503445..504224(-) (codY) [Bacillus velezensis strain GYL4]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment