Detailed information NTG0226539

Bioinformatically predicted

Overview

• Name: endA
• Type: Machinery gene
• Locus tag: B7R82_RS00685
• Genome accession: NZ_CP020858
• Coordinates: 116981..117811 (+)
• Length: 276 a.a.
• NCBI ID: WP_003709392.1
• Uniprot ID: -
• Organism: Ligilactobacillus salivarius strain ZLS006
• Function: cleavage of dsDNA into ssDNA (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	117983..119155	116981..117811	flank	172

Gene organization within MGE regions

Location: 116981..119155

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
B7R82_RS00685 (B7R82_00685)	endA	116981..117811 (+)	831	WP_003709392.1	DNA/RNA non-specific endonuclease	Machinery gene
B7R82_RS00690 (B7R82_00695)	-	117983..119155 (+)	1173	WP_087448488.1	IS256-like element IS1542 family transposase	-

Sequence

Protein

• Length: 276 a.a.
• Molecular weight: 30410.73 Da
• Isoelectric Point: 10.4970

>NTDB_id=226539 B7R82_RS00685 WP_003709392.1 116981..117811(+) (endA) [Ligilactobacillus salivarius strain ZLS006]
MARKKKNKSNKFMRWLATVAVGVALAAVGVNTNHISTPFNNEVASSSTYNKKDYTPTEEQASVVLTDNVRQQLGGNLSFN
GAGAFIVNNNKTNLNTKVSSAPYAVNEVDSLNRPTVANAWLNRTSRQYKNRQATGNGRTSWKPQGFRQVQNLPGRFKHAY
DRGHLLAYALVGNVRGFDASESNEKNIATQTAWANESASKDSTGQNYYEGLVRKALDRNKQVRYRVTDVYDGNNLVPAGA
HLEAKSSDGSLEFNVFVPNVQTNININYATGQATRK

Nucleotide

• Length: 831 bp

>NTDB_id=226539 B7R82_RS00685 WP_003709392.1 116981..117811(+) (endA) [Ligilactobacillus salivarius strain ZLS006]
ATGGCAAGAAAAAAGAAAAATAAATCAAATAAATTTATGAGATGGTTAGCTACCGTTGCTGTAGGGGTTGCTTTAGCAGC
AGTAGGGGTTAATACAAATCATATTAGTACACCATTTAATAATGAGGTTGCAAGTAGTAGTACATATAACAAAAAGGATT
ACACTCCTACTGAGGAACAAGCAAGTGTAGTATTAACAGATAATGTACGCCAACAATTAGGTGGTAATTTAAGCTTTAAT
GGGGCAGGAGCTTTCATTGTAAATAATAATAAGACTAACTTAAATACAAAAGTTTCTAGTGCACCATATGCTGTTAATGA
GGTTGATTCATTGAATCGACCAACTGTTGCGAATGCTTGGCTAAATAGAACTAGTCGTCAATATAAAAATCGTCAAGCTA
CAGGAAATGGGCGTACAAGTTGGAAGCCACAAGGATTTAGACAGGTACAAAACCTGCCAGGTAGATTCAAGCATGCTTAT
GATAGAGGACATTTATTAGCATATGCCCTTGTGGGAAATGTTAGAGGGTTTGATGCTTCTGAATCTAATGAAAAGAATAT
AGCTACTCAAACTGCATGGGCTAATGAATCAGCTTCTAAAGACTCTACTGGACAAAATTACTACGAAGGATTGGTAAGAA
AAGCTTTAGATAGAAACAAGCAGGTTCGTTATCGTGTGACAGATGTCTATGATGGTAATAATCTAGTGCCAGCAGGAGCA
CATTTGGAAGCTAAATCATCAGATGGTTCGCTAGAATTTAATGTATTTGTGCCTAATGTACAAACTAACATAAATATTAA
TTATGCTACAGGACAAGCTACTAGAAAATAA

Domains

Predicted by InterproScan.

• DNA/RNA non-specific endonuclease (Endonuclease_NS) (83-250)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
endA	Streptococcus pneumoniae Rx1	60.538	80.797	0.489
endA	Streptococcus pneumoniae D39	60.538	80.797	0.489
endA	Streptococcus pneumoniae R6	60.538	80.797	0.489
endA	Streptococcus pneumoniae TIGR4	60.538	80.797	0.489