Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   B7941_RS10725 Genome accession   NZ_CP020805
Coordinates   2123347..2124126 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain 9D-6     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2118347..2129126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B7941_RS10705 (B7941_10695) trmFO 2119034..2120341 (+) 1308 WP_061890598.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  B7941_RS10710 (B7941_10700) xerC 2120411..2121328 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  B7941_RS10715 (B7941_10705) hslV 2121344..2121889 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  B7941_RS10720 (B7941_10710) hslU 2121906..2123309 (+) 1404 WP_007611413.1 HslU--HslV peptidase ATPase subunit -
  B7941_RS10725 (B7941_10715) codY 2123347..2124126 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  B7941_RS10730 (B7941_10720) flgB 2124480..2124869 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  B7941_RS10735 (B7941_10725) flgC 2124869..2125321 (+) 453 WP_015239851.1 flagellar basal body rod protein FlgC -
  B7941_RS10740 (B7941_10730) fliE 2125332..2125652 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  B7941_RS10745 (B7941_10735) fliF 2125695..2127305 (+) 1611 WP_012117551.1 flagellar basal-body MS-ring/collar protein FliF -
  B7941_RS10750 (B7941_10740) fliG 2127318..2128334 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  B7941_RS10755 (B7941_10745) fliH 2128327..2129082 (+) 756 WP_015239852.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=225951 B7941_RS10725 WP_003154263.1 2123347..2124126(+) (codY) [Bacillus velezensis strain 9D-6]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=225951 B7941_RS10725 WP_003154263.1 2123347..2124126(+) (codY) [Bacillus velezensis strain 9D-6]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCCGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment