Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   B5P37_RS00430 Genome accession   NZ_CP020773
Coordinates   77413..79809 (-) Length   798 a.a.
NCBI ID   WP_085236045.1    Uniprot ID   A0AAC9RQW6
Organism   Staphylococcus lutrae strain ATCC 700373     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 72413..84809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B5P37_RS00410 (B5P37_00410) - 73439..73765 (-) 327 WP_085236037.1 DUF1292 domain-containing protein -
  B5P37_RS00415 (B5P37_00415) ruvX 73779..74207 (-) 429 WP_085238386.1 Holliday junction resolvase RuvX -
  B5P37_RS00420 (B5P37_00420) - 74200..74472 (-) 273 WP_085236039.1 IreB family regulatory phosphoprotein -
  B5P37_RS00425 (B5P37_00425) alaS 74532..77165 (-) 2634 WP_085236042.1 alanine--tRNA ligase -
  B5P37_RS00430 (B5P37_00430) recD2 77413..79809 (-) 2397 WP_085236045.1 ATP-dependent RecD-like DNA helicase Machinery gene
  B5P37_RS00435 (B5P37_00435) - 79812..80486 (-) 675 WP_085236047.1 tetratricopeptide repeat protein -
  B5P37_RS00440 (B5P37_00440) mnmA 80502..81614 (-) 1113 WP_085236049.1 tRNA 2-thiouridine(34) synthase MnmA -
  B5P37_RS00445 (B5P37_00445) - 81611..82756 (-) 1146 WP_085236051.1 cysteine desulfurase family protein -
  B5P37_RS00450 (B5P37_00450) - 82964..83968 (+) 1005 WP_085236053.1 LLM class flavin-dependent oxidoreductase -
  B5P37_RS00455 (B5P37_00455) - 84080..84265 (-) 186 WP_085236056.1 CsbD family protein -

Sequence

Protein


Download         Length: 798 a.a.        Molecular weight: 90478.19 Da        Isoelectric Point: 4.9059

>NTDB_id=225815 B5P37_RS00430 WP_085236045.1 77413..79809(-) (recD2) [Staphylococcus lutrae strain ATCC 700373]
MTNPTLFDHTYIKGNVEMILFQNSDNYYTVLKVDVEETNGDFVDMATVVGFFPNMVEGETYTFKGHVVQHARYGQQLKAE
TFQKEIPHTSDAVIAYLSSDLFKGIGKKTAESIVNTLGENAIHDILKDESIIGKVPKLSKAKQQQIVEQIYANQESEQVM
IRLNELGFGSKLAMDIYKFYKSETLTMLDQNPYQLVYDIKGVGFQKADQLAQQLGIHPQHPDRFKAGLLYLVEETCIRQG
HTYLPQEALINETIQLLSLRNDIAIEREQIIATLENLVEEKRLIEVDERIAIPSLYYSEIKSTQNLYRVHVHRDKLTQFD
NSDIQLHIGEIETFNEVHYAPSQKDALECAMRHKVMLLTGGPGTGKTTVIKGIVQLYSEIHGISLDYNDYDQDDYPVVLA
APTGRASKRLHEATGLEAMTIHRLIGWNQETKPDDLLENEINAKLIIIDEMSMVDTWLFHQFMAAVPMDAQVVLVGDEDQ
LPSVGPGQVFKDLIEANVLPRVNLTEVYRQQEGSSIIDLAHRMKLGETVDITQRFHDRSFIPCHTEQIPQVVEKVVKNAV
QKGYTMADIQVLAPMYRGNAGIKKLNQILQNILNPLTDRDDHREMEFGDVVFRKGDKVLQLVNRPNDNIFNGDIGVIVGI
FWAKENVLNKDVVIVDYDGNEITYARSDLTELTHAYCTSIHKAQGSEFPIVIMPIVKQYFRMLQKPILYTGLTRAKQSLV
FLGDSEAFNIGLATAGQTRLTQLLDFLKQYFKTDDPSTDVQDASSTVISLTEETLFKIHPMINMGDVTPYDFMEIDKA

Nucleotide


Download         Length: 2397 bp        

>NTDB_id=225815 B5P37_RS00430 WP_085236045.1 77413..79809(-) (recD2) [Staphylococcus lutrae strain ATCC 700373]
ATGACAAATCCAACACTGTTTGACCATACTTATATTAAAGGTAACGTAGAAATGATACTCTTTCAAAATAGCGATAATTA
TTATACAGTGCTCAAAGTTGACGTTGAAGAGACGAACGGTGACTTTGTTGATATGGCGACAGTTGTTGGATTTTTTCCCA
ATATGGTTGAAGGTGAAACGTACACGTTTAAAGGCCATGTTGTTCAACACGCACGATATGGTCAACAATTAAAAGCAGAG
ACGTTTCAAAAAGAAATTCCACATACCTCCGACGCTGTGATTGCCTATTTATCGAGTGATTTGTTCAAAGGGATTGGCAA
GAAAACGGCAGAATCGATTGTCAATACATTAGGCGAAAATGCCATACATGACATTTTAAAAGATGAAAGCATTATTGGCA
AAGTCCCTAAATTATCAAAAGCGAAACAACAGCAAATTGTTGAGCAAATTTATGCGAATCAAGAAAGCGAACAAGTGATG
ATAAGATTAAACGAGTTAGGCTTTGGTTCTAAGCTTGCTATGGATATTTATAAATTTTATAAAAGTGAAACGCTTACAAT
GCTGGACCAAAATCCTTATCAACTTGTATATGACATTAAAGGGGTCGGCTTTCAAAAAGCAGATCAACTTGCGCAACAGC
TGGGTATTCATCCACAACATCCAGATCGATTTAAAGCAGGATTGCTGTATTTAGTTGAAGAAACTTGCATTAGACAAGGT
CATACGTATTTGCCACAAGAAGCGCTGATTAATGAAACGATTCAATTGTTATCGTTACGTAATGACATAGCAATTGAACG
TGAGCAAATCATAGCAACATTAGAAAATTTAGTTGAAGAAAAACGACTGATTGAAGTGGACGAACGTATCGCAATACCCA
GTTTATATTATTCGGAAATTAAAAGTACTCAAAATTTATACCGCGTGCATGTGCATCGAGATAAATTGACACAATTTGAT
AATTCGGATATTCAACTCCATATTGGTGAAATCGAAACATTCAATGAAGTCCACTATGCACCATCACAAAAAGATGCATT
GGAATGTGCAATGCGTCATAAAGTGATGTTGCTTACGGGCGGACCAGGAACGGGTAAAACAACGGTTATAAAAGGGATTG
TACAATTATATTCGGAGATTCATGGCATTTCACTTGATTACAATGATTATGACCAAGATGATTATCCAGTCGTTTTAGCT
GCGCCAACAGGTCGTGCCTCAAAACGACTTCATGAAGCAACAGGATTAGAAGCGATGACAATCCATCGCCTCATCGGTTG
GAACCAAGAAACAAAACCTGATGATTTGTTAGAAAATGAAATTAATGCAAAATTGATTATTATCGATGAAATGTCAATGG
TAGACACTTGGTTGTTTCACCAATTCATGGCTGCAGTCCCTATGGATGCACAAGTGGTATTGGTCGGGGATGAAGATCAA
TTGCCTTCAGTAGGACCTGGTCAAGTCTTTAAAGATTTAATTGAAGCCAATGTCTTACCACGTGTGAATTTAACCGAAGT
TTATCGTCAACAAGAAGGTTCAAGTATTATCGATTTGGCCCATCGAATGAAGTTAGGCGAAACGGTCGATATTACCCAAC
GATTTCATGATCGTTCATTTATCCCATGTCACACTGAGCAAATTCCACAAGTCGTCGAAAAAGTAGTGAAAAACGCGGTA
CAAAAAGGTTACACAATGGCAGACATTCAAGTGTTAGCCCCTATGTATCGTGGTAACGCAGGTATCAAAAAGTTAAATCA
AATTTTGCAAAATATTTTAAATCCATTGACTGATCGCGATGACCACCGTGAGATGGAATTTGGTGATGTTGTATTTCGCA
AAGGAGATAAAGTATTGCAGTTGGTCAATCGACCGAATGATAATATTTTTAATGGGGATATTGGTGTGATAGTCGGTATT
TTTTGGGCAAAAGAAAATGTATTAAATAAAGACGTTGTCATTGTTGATTATGATGGGAATGAAATTACATACGCGCGCTC
TGATTTAACTGAACTGACGCATGCATATTGTACATCTATTCATAAAGCACAAGGATCTGAATTTCCAATCGTAATTATGC
CGATTGTTAAACAATATTTCAGAATGCTTCAAAAACCGATTCTTTATACTGGCTTAACGCGAGCAAAACAATCCCTCGTT
TTTCTTGGGGATTCCGAAGCATTCAATATTGGATTAGCGACAGCCGGACAAACAAGATTAACCCAATTACTAGATTTTCT
GAAACAATATTTTAAAACTGATGATCCATCGACTGACGTACAAGATGCGTCCTCGACTGTTATTTCATTAACAGAAGAAA
CATTGTTTAAAATTCATCCGATGATTAATATGGGTGATGTGACACCATATGACTTTATGGAAATTGACAAAGCTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(674-721)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(585-655)

AAA domain (AAA_30)

(339-545)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

49.562

100

0.496

Multiple sequence alignment