Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   HM131_RS09010 Genome accession   NZ_CP020772
Coordinates   1869443..1871770 (+) Length   775 a.a.
NCBI ID   WP_085029446.1    Uniprot ID   A0A1W5ZUI0
Organism   Halobacillus mangrovi strain KTB 131     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1864443..1876770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HM131_RS08985 (HM131_08985) - 1865282..1865968 (+) 687 WP_232324904.1 YitT family protein -
  HM131_RS08990 (HM131_08990) cymR 1865922..1866341 (+) 420 WP_085029442.1 cysteine metabolism transcriptional regulator CymR -
  HM131_RS08995 (HM131_08995) - 1866359..1867498 (+) 1140 WP_085029443.1 cysteine desulfurase family protein -
  HM131_RS09000 (HM131_09000) mnmA 1867517..1868629 (+) 1113 WP_085029444.1 tRNA 2-thiouridine(34) synthase MnmA -
  HM131_RS09005 (HM131_09005) - 1868761..1869420 (+) 660 WP_085029445.1 lipopolysaccharide assembly protein LapB -
  HM131_RS09010 (HM131_09010) recD2 1869443..1871770 (+) 2328 WP_085029446.1 ATP-dependent RecD-like DNA helicase Machinery gene
  HM131_RS09015 (HM131_09015) - 1871791..1872606 (+) 816 WP_085029447.1 TIM barrel protein -
  HM131_RS20910 - 1872664..1872840 (+) 177 WP_198162750.1 hypothetical protein -
  HM131_RS09020 (HM131_09020) - 1872847..1873914 (+) 1068 WP_085029448.1 AI-2E family transporter -

Sequence

Protein


Download         Length: 775 a.a.        Molecular weight: 89189.31 Da        Isoelectric Point: 4.9960

>NTDB_id=225796 HM131_RS09010 WP_085029446.1 1869443..1871770(+) (recD2) [Halobacillus mangrovi strain KTB 131]
MIQQSFFSESGEDRPYVKGELSRMIFHNDSEHFSIASIKVQETNEDFKEKSLVIKGHFSPLEEGETYIFFGQFQNHKKFG
LQYEVEMYNRVLPETKDGLIMYLSSDLFHGIGKKTAERIIDHLGEQAISRILENREILSEVPRLPKEKADQFYETLKEHQ
GFEHIMIHLSQYGFGLKLSQKIYEVFKDQTLAIIEEDPYQLVFKVEGFGFHRADEIARMQNLNHDHPTRIRAACLYMLQK
SMSAGHVYLPTEECLKQVDQLLNQGFEPEITFEQLSEQIIHLGEERYVYVEEDRIYLPSLYFAENGFCRHMKRMLEEEVD
TEHTQADLMKVIGEIEEEESISYGEDQFHAIEKALHSKLMILTGGPGTGKTTVIKGIIQSYALLNDVSIDPDDYKSDEPF
PFILVAPTGRAAKRMTESTGLPASTIHRLLGWDGHDQFERNQNNPLEGKVLIVDEFSMVDIWLANQLFRAVPSDMQVLLV
GDEDQLPSVGPGQVLADLLASSQLPSVKLTEVYRQKEGSKIIQLAHEIKNNTCTRQSLVKEHDFNFIPAHEHQLTELITS
IVKKAVDKGIELKELQVLAPMYRTDVGIHKLNAEIQKVINPKHKQKRDITFKETTFRKGDKVIQLVNQPEDGVYNGDIGE
IVAIFREEENVDGVEQVVVEYEGKEVVYPKKDLSNIMHAYCTSIHKSQGSEFSIVILPVVRSYRRMLRKNLLYTAITRSK
QSLIICGDRNAFIEGIQTTDTNLRYTRLKEKLQEETTHEPEIEEEEEELSPYDFM

Nucleotide


Download         Length: 2328 bp        

>NTDB_id=225796 HM131_RS09010 WP_085029446.1 1869443..1871770(+) (recD2) [Halobacillus mangrovi strain KTB 131]
ATGATACAACAATCTTTTTTTTCTGAATCTGGGGAAGATCGTCCGTATGTAAAAGGAGAACTGAGCCGGATGATTTTTCA
TAATGATTCAGAACACTTTTCGATCGCATCCATCAAAGTGCAAGAAACAAATGAAGATTTTAAAGAAAAGAGTCTTGTCA
TAAAAGGCCATTTCTCTCCTCTTGAAGAAGGTGAAACCTATATCTTCTTCGGACAGTTCCAAAATCATAAGAAGTTTGGG
TTGCAGTATGAAGTAGAAATGTACAACCGTGTGCTGCCAGAAACAAAAGATGGACTCATTATGTACTTATCGAGTGATCT
CTTCCATGGAATAGGGAAAAAAACGGCTGAGAGAATCATAGATCATTTAGGAGAACAAGCGATCTCACGTATCCTTGAAA
ATAGAGAAATACTTAGTGAGGTTCCAAGACTGCCAAAAGAAAAAGCAGATCAGTTTTATGAAACCCTAAAAGAACATCAG
GGATTTGAACATATTATGATTCATCTTTCTCAATATGGATTTGGATTGAAACTCTCTCAAAAAATCTACGAAGTGTTTAA
GGATCAGACCCTCGCAATCATTGAAGAAGATCCCTATCAGCTTGTGTTTAAAGTAGAAGGGTTTGGCTTCCATCGAGCGG
ATGAAATTGCGAGAATGCAAAATTTAAATCATGATCATCCGACTCGCATAAGGGCCGCATGTTTGTATATGCTGCAAAAA
AGTATGTCTGCAGGACATGTGTATTTACCAACAGAGGAATGTTTAAAGCAAGTGGATCAACTGTTGAATCAAGGCTTTGA
GCCTGAGATCACTTTTGAACAATTGTCAGAGCAGATCATCCACCTCGGAGAAGAGCGCTACGTTTATGTTGAAGAAGACA
GAATTTACCTGCCTTCTTTGTACTTTGCAGAGAATGGTTTCTGCCGGCATATGAAGCGAATGCTAGAGGAAGAAGTAGAT
ACGGAACACACTCAAGCAGACTTAATGAAAGTCATAGGGGAGATTGAAGAAGAAGAATCAATCAGTTATGGGGAAGATCA
ATTTCACGCAATCGAAAAAGCGTTACATTCAAAATTAATGATTTTAACGGGTGGTCCGGGTACAGGGAAAACAACTGTTA
TTAAAGGAATCATTCAATCTTATGCGCTTCTCAACGATGTATCCATTGACCCAGATGATTATAAATCAGATGAGCCATTT
CCATTCATTCTCGTTGCTCCAACTGGACGGGCCGCAAAACGAATGACAGAATCAACGGGGCTACCTGCAAGCACGATTCA
TCGATTGCTGGGTTGGGATGGGCATGACCAGTTCGAACGTAACCAGAACAATCCGTTAGAAGGAAAAGTTTTAATTGTTG
ATGAATTCTCTATGGTGGATATATGGCTGGCTAACCAATTATTTCGTGCCGTACCTTCAGATATGCAAGTTTTACTGGTG
GGGGATGAGGATCAGCTTCCCTCCGTCGGACCTGGTCAGGTTTTAGCTGACTTATTGGCCTCTAGTCAATTGCCTTCTGT
AAAACTGACTGAAGTGTACAGGCAAAAAGAAGGCTCAAAGATTATTCAATTGGCCCATGAAATAAAGAATAATACGTGTA
CAAGACAATCGCTTGTGAAAGAACATGACTTTAATTTCATTCCTGCCCATGAGCACCAACTTACAGAGCTTATCACCAGC
ATAGTAAAAAAAGCTGTGGATAAAGGAATTGAGTTAAAAGAACTTCAAGTTCTCGCTCCGATGTATCGAACGGACGTAGG
CATTCATAAATTGAATGCAGAAATTCAGAAGGTGATAAACCCAAAACATAAACAGAAGCGAGACATCACGTTCAAAGAGA
CCACCTTCAGAAAAGGGGATAAAGTCATCCAGCTTGTTAATCAACCAGAAGATGGCGTCTACAACGGAGATATAGGAGAA
ATTGTCGCTATTTTTCGTGAAGAAGAGAATGTGGATGGGGTCGAACAGGTGGTAGTAGAATACGAAGGAAAAGAAGTCGT
TTATCCCAAAAAGGATTTAAGCAATATTATGCATGCGTATTGTACTTCTATCCATAAATCACAGGGAAGTGAGTTTTCTA
TTGTCATCTTGCCCGTTGTAAGAAGTTACAGGCGTATGTTAAGGAAGAACTTATTGTACACAGCCATTACACGTTCGAAG
CAGTCCCTTATCATTTGTGGGGACCGTAACGCTTTTATCGAAGGTATCCAAACGACTGACACGAACTTACGTTATACGAG
GCTTAAGGAAAAACTACAGGAAGAGACAACACACGAGCCTGAGATCGAAGAAGAAGAGGAAGAGCTTTCCCCTTATGACT
TTATGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-248)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(678-726)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(591-661)

AAA domain (AAA_30)

(343-536)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1W5ZUI0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

48.148

100

0.486

Multiple sequence alignment