Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   B7492_RS23520 Genome accession   NZ_CP020743
Coordinates   4486808..4489144 (-) Length   778 a.a.
NCBI ID   WP_002015289.1    Uniprot ID   R8I2W7
Organism   Bacillus mycoides strain Gnyt1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4481808..4494144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B7492_RS23495 (B7492_23475) - 4484468..4484812 (+) 345 WP_085312415.1 PH domain-containing protein -
  B7492_RS23500 (B7492_23480) - 4484851..4485918 (-) 1068 WP_085312416.1 AI-2E family transporter -
  B7492_RS23505 (B7492_23485) - 4486096..4486308 (+) 213 WP_002015285.1 hypothetical protein -
  B7492_RS23510 (B7492_23490) - 4486345..4486473 (-) 129 WP_002015286.1 YrzQ family protein -
  B7492_RS23515 (B7492_23495) - 4486492..4486680 (-) 189 WP_002015288.1 hypothetical protein -
  B7492_RS23520 (B7492_23500) recD2 4486808..4489144 (-) 2337 WP_002015289.1 ATP-dependent RecD-like DNA helicase Machinery gene
  B7492_RS23525 (B7492_23505) - 4489252..4489911 (-) 660 WP_002088750.1 tetratricopeptide repeat protein -
  B7492_RS23530 (B7492_23510) mnmA 4490022..4491137 (-) 1116 WP_002088752.1 tRNA 2-thiouridine(34) synthase MnmA -
  B7492_RS23535 (B7492_23515) - 4491154..4492299 (-) 1146 WP_085312417.1 cysteine desulfurase family protein -
  B7492_RS23540 (B7492_23520) cymR 4492335..4492751 (-) 417 WP_000704117.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87200.82 Da        Isoelectric Point: 5.2670

>NTDB_id=225694 B7492_RS23520 WP_002015289.1 4486808..4489144(-) (recD2) [Bacillus mycoides strain Gnyt1]
MGNQHAMDLFEEEKKFIKAQVLHTIFHNEENLYSVVSMKVIETNETYDEKKVMINGHFPRMHEDEVFTLTGHFKDHPKYG
KQYLVETFKKELPQTKAGMVQYLASDLFKGIGKRTAEKIVDHLGEHAISKIMDDPDALSGVVNKQKAQEIYETIIEHQGL
EKVMSFLNGYGFGTKLSIKIYQQYKEMTLEVIRNNPYKLIEEVDGIGFGRADDIGRAIGITGNHDDRVRAGCFYTLENIS
LQLGHVYMEKGQLVRETMSLLNNQEGRVTEEDIVGCVEMMQSEGKVIIEEERVYLASLFYSEKGVVKSIRRLMNQEETPA
FPEAEVLKTLGEIEEQLKVQYAPLQQEAVQTALHKPMMLLTGGPGTGKTTVIKGIVEMYASLHGVSLNPNEYSDDNPFPI
LLTAPTGRAAKRMSESTGLPACTIHRLLGWTPEGSFQRNETDPVQGKLLIIDEFSMVDIWLANQLFKSLPTNIQVIVVGD
EDQLPSVGPGQVLKDLLNAGAVPTVKLTEIYRQAEGSSVIQLAHAIKDGTLPPDLAQNKKDRSFISCAGAQIVEVVKKVC
ENAKTKGFSARDVQVLAPMYRGPAGINVLNEALQEVFNPKKEKSKEIAYGDVVYRRGDKVLQLVNQPESQVFNGDIGEIV
SVFYAKENVEQQDMIIVSFDGIEVTYTKPDLNQITHAYCCSIHKSQGSEFPIVIMPIVKSYNRMLRRNLIYTGITRSKKF
LIICGEEAAFQSGVNRLDDAMRQTTLAGRLQESQGEVQMVTVNGEEMDVENISPYDFM

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=225694 B7492_RS23520 WP_002015289.1 4486808..4489144(-) (recD2) [Bacillus mycoides strain Gnyt1]
ATGGGAAATCAACATGCAATGGATTTGTTTGAGGAAGAAAAAAAATTTATAAAAGCGCAAGTTCTTCATACCATTTTCCA
CAACGAAGAAAACCTCTATTCCGTTGTCAGTATGAAAGTCATTGAAACGAATGAAACATACGACGAAAAAAAAGTAATGA
TAAACGGTCATTTTCCCCGTATGCATGAAGATGAAGTGTTTACATTAACAGGTCATTTTAAAGACCACCCAAAGTATGGA
AAACAATATTTAGTTGAAACGTTTAAAAAAGAACTGCCACAAACAAAAGCAGGTATGGTGCAATATTTAGCGAGCGATTT
ATTTAAAGGGATTGGAAAGCGTACAGCCGAAAAAATCGTGGACCATCTTGGTGAGCATGCGATTTCTAAAATTATGGATG
ATCCGGATGCGTTAAGTGGTGTTGTAAACAAGCAAAAAGCGCAGGAAATATATGAGACGATTATTGAGCATCAAGGGCTC
GAGAAAGTGATGAGTTTTTTAAATGGTTACGGTTTTGGAACAAAACTTTCTATTAAAATTTATCAGCAATATAAAGAGAT
GACATTAGAAGTGATTCGTAATAATCCGTATAAACTTATTGAAGAAGTGGACGGAATTGGATTTGGAAGAGCAGATGATA
TAGGGCGTGCAATCGGAATAACGGGCAATCACGACGACCGTGTACGTGCAGGGTGTTTTTATACGTTAGAGAATATTTCA
TTACAACTCGGTCACGTGTATATGGAAAAAGGTCAGCTTGTAAGAGAAACGATGTCACTTTTAAATAATCAAGAAGGCAG
AGTGACTGAGGAAGATATTGTAGGCTGCGTTGAAATGATGCAAAGCGAAGGGAAAGTCATTATAGAAGAAGAGCGAGTGT
ATTTAGCTTCTTTATTCTATTCTGAGAAAGGCGTTGTAAAGTCAATTCGTCGTCTTATGAATCAAGAAGAAACCCCTGCA
TTCCCTGAAGCAGAAGTGTTAAAAACATTAGGAGAAATTGAAGAACAGCTAAAGGTACAGTATGCGCCGCTTCAGCAAGA
AGCAGTTCAAACTGCACTTCATAAGCCGATGATGTTATTAACAGGTGGACCAGGGACGGGGAAAACAACAGTTATTAAAG
GAATTGTTGAAATGTATGCGTCACTTCACGGAGTATCATTAAATCCGAATGAATATAGTGATGATAATCCATTTCCAATA
TTATTAACGGCCCCAACTGGAAGAGCGGCGAAGCGCATGAGTGAATCGACAGGACTTCCAGCTTGCACAATTCATCGTCT
GCTTGGATGGACGCCAGAAGGATCTTTTCAGCGCAATGAAACAGACCCTGTACAAGGGAAGCTCCTTATTATTGATGAGT
TTTCGATGGTAGATATTTGGCTTGCAAATCAGCTATTCAAGTCACTTCCGACAAATATTCAAGTTATCGTTGTAGGTGAT
GAAGATCAGTTGCCATCTGTAGGACCTGGACAAGTGTTAAAAGATTTATTGAATGCAGGTGCGGTTCCAACGGTCAAGCT
TACAGAAATTTATCGTCAAGCGGAAGGGTCATCTGTTATTCAACTTGCCCATGCGATAAAAGACGGAACACTTCCACCAG
ATTTAGCGCAAAATAAAAAAGATCGTTCATTTATCAGCTGTGCAGGTGCTCAAATTGTTGAAGTTGTAAAAAAAGTATGT
GAAAACGCGAAGACGAAAGGGTTTAGCGCAAGAGATGTACAAGTGTTGGCACCTATGTACCGCGGACCGGCAGGTATTAA
TGTGCTAAATGAAGCTCTCCAAGAAGTGTTCAATCCGAAAAAAGAAAAAAGTAAAGAAATTGCTTACGGTGACGTTGTAT
ACCGCAGAGGTGATAAAGTACTTCAATTAGTCAATCAGCCGGAAAGCCAAGTATTTAATGGTGATATCGGAGAAATCGTT
TCGGTGTTTTATGCGAAAGAAAATGTTGAGCAACAAGATATGATTATCGTTTCATTTGATGGGATTGAAGTAACGTATAC
AAAGCCAGATTTAAATCAAATTACACATGCATATTGCTGCTCGATTCATAAATCACAAGGTAGTGAATTTCCGATTGTTA
TTATGCCGATTGTAAAAAGCTATAACCGTATGTTACGTCGTAATTTAATTTACACGGGTATTACAAGGAGTAAGAAATTC
CTTATTATTTGCGGGGAGGAAGCAGCGTTTCAATCCGGTGTAAATCGCCTTGATGATGCAATGCGTCAAACGACTTTAGC
TGGCCGATTGCAAGAATCACAAGGAGAAGTGCAGATGGTGACGGTTAATGGTGAAGAAATGGACGTGGAAAACATTTCAC
CGTATGATTTCATGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(341-548)

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-724)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-659)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R8I2W7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

56.89

100

0.578

Multiple sequence alignment