Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   B7P25_RS19935 Genome accession   NZ_CP020723
Coordinates   3693666..3694445 (-) Length   259 a.a.
NCBI ID   WP_087932299.1    Uniprot ID   -
Organism   Bacillus thuringiensis strain BM-BT15426     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3688666..3699445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B7P25_RS19910 (B7P25_19860) uppS 3689407..3690183 (-) 777 WP_061185433.1 isoprenyl transferase -
  B7P25_RS19915 (B7P25_19865) frr 3690269..3690826 (-) 558 WP_000531503.1 ribosome recycling factor -
  B7P25_RS19920 (B7P25_19870) pyrH 3690829..3691552 (-) 724 Protein_3696 UMP kinase -
  B7P25_RS19925 (B7P25_19875) tsf 3691619..3692506 (-) 888 WP_001018578.1 translation elongation factor Ts -
  B7P25_RS19930 (B7P25_19880) rpsB 3692610..3693311 (-) 702 WP_087932298.1 30S ribosomal protein S2 -
  B7P25_RS19935 (B7P25_19885) codY 3693666..3694445 (-) 780 WP_087932299.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  B7P25_RS19940 (B7P25_19890) hslU 3694523..3695914 (-) 1392 WP_000550088.1 ATP-dependent protease ATPase subunit HslU -
  B7P25_RS19945 (B7P25_19895) hslV 3695937..3696479 (-) 543 WP_000526272.1 ATP-dependent protease proteolytic subunit HslV -
  B7P25_RS19950 (B7P25_19900) xerC 3696522..3697421 (-) 900 WP_001101227.1 tyrosine recombinase XerC -
  B7P25_RS19955 (B7P25_19905) trmFO 3697487..3698791 (-) 1305 WP_087932688.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28765.04 Da        Isoelectric Point: 4.7165

>NTDB_id=225553 B7P25_RS19935 WP_087932299.1 3693666..3694445(-) (codY) [Bacillus thuringiensis strain BM-BT15426]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=225553 B7P25_RS19935 WP_087932299.1 3693666..3694445(-) (codY) [Bacillus thuringiensis strain BM-BT15426]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAAAACGAACGCATGAAACAAATGCTTGCAGAACGTCAATTCCCAGAAGAATATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAACAAAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAATTAGAAGCAAT
CGAGCACATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCGGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTACTAAACGACAAATTCCTACAGGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(2-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.081

100

0.811
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459

Multiple sequence alignment