Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   VV1_RS23080 Genome accession   NC_004459
Coordinates   873020..873730 (+) Length   236 a.a.
NCBI ID   WP_043920923.1    Uniprot ID   -
Organism   Vibrio vulnificus CMCP6     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 868020..878730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VV1_RS04140 (VV1_0859) greB 868298..868780 (-) 483 WP_011078926.1 transcription elongation factor GreB -
  VV1_RS04145 (VV1_0860) - 869016..871340 (+) 2325 WP_011078927.1 Tex family protein -
  VV1_RS04150 (VV1_0861) - 871556..872026 (-) 471 WP_011078928.1 hypothetical protein -
  VV1_RS04155 (VV1_0862) bioH 872164..872931 (-) 768 WP_011078929.1 pimeloyl-ACP methyl ester esterase BioH -
  VV1_RS23080 (VV1_0863) comF 873020..873730 (+) 711 WP_043920923.1 amidophosphoribosyltransferase Machinery gene
  VV1_RS04165 (VV1_0864) nfuA 873861..874445 (+) 585 WP_026050270.1 Fe-S biogenesis protein NfuA -
  VV1_RS04170 (VV1_0865) nudE 874561..875115 (+) 555 WP_011078932.1 ADP compounds hydrolase NudE -
  VV1_RS04175 (VV1_0866) cysQ 875130..875957 (+) 828 WP_011078933.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  VV1_RS04180 (VV1_0867) - 876085..876846 (-) 762 WP_011078934.1 type II secretion system protein N -
  VV1_RS04185 (VV1_0868) - 876848..877339 (-) 492 WP_011078935.1 type II secretion system protein M -
  VV1_RS04190 (VV1_0869) gspL 877347..878546 (-) 1200 WP_043920924.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27280.02 Da        Isoelectric Point: 9.8519

>NTDB_id=22554 VV1_RS23080 WP_043920923.1 873020..873730(+) (comF) [Vibrio vulnificus CMCP6]
MLTDWLSEKILRSLPRLCHLCGLPMNHDHHPLWCQHCLTLFDAEPRCQRCGLPTLTVVPQCGQCLKSPPPWQRLYCLTPY
RFPTSHYVNQIKHQRKFWYCASLAPLLIQRIDRPAPLLLSVPMHWRRQWLRGFNQSDVLAAQLARRLNRPFLAHAFTRLL
HTPPQQGLNKQQRQRNLAGAFRLNRSALPHAIPKHVAIVDDVVTTGSTVRQLCQLLLAVGVESIDIYCLCRTPEKD

Nucleotide


Download         Length: 711 bp        

>NTDB_id=22554 VV1_RS23080 WP_043920923.1 873020..873730(+) (comF) [Vibrio vulnificus CMCP6]
ATGTTAACCGATTGGCTTAGTGAAAAAATACTCCGATCTCTTCCTCGCCTCTGTCATCTGTGCGGCTTGCCGATGAATCA
CGACCATCACCCGCTTTGGTGCCAGCACTGCCTAACCCTGTTCGATGCCGAACCGCGTTGCCAACGTTGCGGGCTGCCGA
CGTTAACGGTTGTCCCCCAGTGCGGCCAATGTCTGAAATCTCCGCCCCCTTGGCAAAGGCTTTACTGCCTCACGCCGTAT
CGCTTTCCAACCTCACACTACGTCAATCAAATCAAACATCAGCGCAAGTTCTGGTACTGTGCCAGCTTGGCACCTTTGCT
CATCCAACGCATTGACCGCCCCGCGCCACTGCTGCTCTCTGTGCCAATGCATTGGCGTCGGCAATGGCTACGAGGCTTCA
ATCAAAGCGATGTGTTGGCGGCGCAACTGGCCCGTAGATTAAATCGCCCCTTCCTTGCTCACGCGTTTACTCGTTTATTG
CACACTCCGCCACAGCAAGGGCTCAATAAACAGCAGCGTCAGCGCAACTTAGCGGGTGCCTTTCGCCTCAATCGCTCGGC
TCTGCCCCATGCGATTCCCAAGCATGTCGCGATTGTCGATGATGTGGTCACGACGGGCAGTACGGTACGACAATTATGTC
AATTACTGCTTGCAGTCGGCGTGGAAAGCATTGATATTTATTGCCTCTGCCGAACTCCCGAGAAGGATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(138-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

56.41

99.153

0.559
  comF Vibrio campbellii strain DS40M4

46.667

100

0.475

Multiple sequence alignment