Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   GBS_RS04825 Genome accession   NC_004368
Coordinates   911669..912526 (+) Length   285 a.a.
NCBI ID   WP_000163019.1    Uniprot ID   A0AAW6XT88
Organism   Streptococcus agalactiae NEM316     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 906669..917526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GBS_RS04795 (gbs0880) - 906985..907866 (+) 882 WP_000919082.1 F0F1 ATP synthase subunit gamma -
  GBS_RS04800 (gbs0881) atpD 907940..909346 (+) 1407 WP_000094377.1 F0F1 ATP synthase subunit beta -
  GBS_RS04805 (gbs0882) - 909359..909772 (+) 414 WP_000068053.1 F0F1 ATP synthase subunit epsilon -
  GBS_RS04810 - 909837..910067 (+) 231 WP_000602601.1 DUF1146 family protein -
  GBS_RS04815 (gbs0883) murA 910130..911401 (+) 1272 WP_000357880.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  GBS_RS04820 (gbs0884) - 911403..911594 (+) 192 WP_000168511.1 DNA-directed RNA polymerase subunit beta -
  GBS_RS04825 (gbs0885) endA 911669..912526 (+) 858 WP_000163019.1 DNA/RNA non-specific endonuclease Machinery gene
  GBS_RS04830 (gbs0886) pheS 912817..913857 (+) 1041 WP_000365658.1 phenylalanine--tRNA ligase subunit alpha -
  GBS_RS04835 (gbs0887) - 913940..914461 (+) 522 WP_000078403.1 GNAT family N-acetyltransferase -
  GBS_RS04840 (gbs0888) pheT 914515..916920 (+) 2406 WP_000961585.1 phenylalanine--tRNA ligase subunit beta -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 31366.37 Da        Isoelectric Point: 10.4835

>NTDB_id=22466 GBS_RS04825 WP_000163019.1 911669..912526(+) (endA) [Streptococcus agalactiae NEM316]
MTKKQKQITASIVTLLFSLLAIGLGESKSLPNDHILKQVTDLIISNESGKNTSLKNVSGTPSRELSESVLTSNVKKQLGT
NIAWNQSGAFIINQNKTDLNAKVSSAPYAINEIKKVNNQIVPTKANALLTKATRQYRNREETGNGRTYWKPAGWHQINGL
KGSYNHAVDRGHLIGYALVGSLRGFDASTSNPKNIATQAAWANQANSNQSTGQNYYETLVRKALDRHKTIRYRVTLIYDR
DNLLSSGSHIEAKSSDGSLEFNVFIPNVQSGLLFDYATGKVKQTK

Nucleotide


Download         Length: 858 bp        

>NTDB_id=22466 GBS_RS04825 WP_000163019.1 911669..912526(+) (endA) [Streptococcus agalactiae NEM316]
ATGACAAAAAAACAAAAACAAATAACAGCTTCGATTGTAACTTTGCTTTTTTCATTACTAGCAATAGGGTTAGGTGAAAG
CAAATCTTTGCCTAATGATCACATTTTAAAACAGGTGACAGATTTAATTATTAGTAATGAATCTGGCAAAAATACTTCCC
TTAAAAATGTATCAGGAACCCCTAGTAGAGAGTTATCTGAATCTGTTTTGACTAGCAATGTTAAAAAACAATTGGGAACA
AATATAGCTTGGAACCAGTCAGGTGCTTTTATCATTAATCAAAATAAAACAGATTTGAATGCTAAAGTGTCAAGTGCACC
ATATGCTATTAATGAAATAAAGAAGGTTAATAACCAAATTGTTCCGACTAAAGCAAATGCCTTATTAACAAAGGCAACTC
GTCAATATCGAAATCGAGAAGAAACAGGGAATGGTAGAACTTATTGGAAACCAGCTGGATGGCATCAGATAAATGGATTA
AAAGGGAGCTATAACCATGCTGTGGACAGAGGCCATTTAATTGGTTATGCTTTAGTAGGGAGTTTAAGAGGATTTGATGC
CTCCACAAGTAATCCTAAAAATATTGCCACACAAGCAGCTTGGGCAAACCAAGCTAATAGCAACCAATCAACAGGGCAAA
ATTATTATGAAACTTTAGTTCGTAAAGCATTGGATCGTCATAAAACTATTAGGTATCGTGTGACTTTAATTTATGATAGA
GATAATCTTTTATCTTCGGGATCACATATTGAGGCTAAATCTTCAGATGGAAGTTTAGAATTTAACGTTTTTATTCCTAA
TGTACAATCGGGATTATTATTTGATTATGCAACAGGAAAAGTGAAGCAGACAAAGTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(87-243)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

65.948

81.404

0.537
  endA Streptococcus pneumoniae D39

65.948

81.404

0.537
  endA Streptococcus pneumoniae R6

65.948

81.404

0.537
  endA Streptococcus pneumoniae TIGR4

65.948

81.404

0.537

Multiple sequence alignment