Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   C2E46_RS03600 Genome accession   NZ_CP026082
Coordinates   672743..673528 (+) Length   261 a.a.
NCBI ID   WP_000825433.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain YZ1605     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 667743..678528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2E46_RS11870 - 668861..669571 (+) 711 Protein_630 ABC transporter permease -
  C2E46_RS11600 - 669755..670213 (+) 459 WP_367646391.1 FtsX-like permease family protein -
  C2E46_RS03590 (C2E46_03700) - 670310..670981 (+) 672 WP_000891266.1 ATP-binding cassette domain-containing protein -
  C2E46_RS03595 (C2E46_03705) - 671038..672483 (-) 1446 WP_161501820.1 FAD/NAD(P)-binding protein -
  C2E46_RS03600 (C2E46_03710) endA 672743..673528 (+) 786 WP_000825433.1 DNA/RNA non-specific endonuclease Machinery gene
  C2E46_RS03605 (C2E46_03715) - 673540..674994 (-) 1455 WP_115356337.1 IS1182-like element IS1563 family transposase -
  C2E46_RS03610 (C2E46_03720) - 675168..675806 (-) 639 WP_000478529.1 VTT domain-containing protein -
  C2E46_RS03615 (C2E46_03725) - 676022..676678 (+) 657 WP_000121096.1 ATP-binding cassette domain-containing protein -
  C2E46_RS03620 (C2E46_03730) fetB 676675..677448 (+) 774 WP_000011928.1 iron export ABC transporter permease subunit FetB -
  C2E46_RS03625 (C2E46_03735) - 677612..678430 (+) 819 WP_000601005.1 hypothetical protein -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 29378.79 Da        Isoelectric Point: 8.9989

>NTDB_id=224487 C2E46_RS03600 WP_000825433.1 672743..673528(+) (endA) [Streptococcus agalactiae strain YZ1605]
MKRLHKLFITVIATLGMLGVMTFGLPTQPQNVTPIVHADVNSSVDTSQEFQNNLKNAIGNLPFQYVNGIYELNNNQTNLN
ADVNVKAYVQNTIDNQQRPSAANAMLDRTIRQYQNRRDTTLPDANWKPLGWHQVATNDHYGHAVDKGHLIAYALAGNFKG
WDASVSNPQNVVTQTAHSNQSNQKINRGQNYYESLVRKAVDQNKRVRYRVTPLYRNDTDLVPFAMHLEAKSQDGTLEFNV
AIPNTQASYTMDYATGEITLN

Nucleotide


Download         Length: 786 bp        

>NTDB_id=224487 C2E46_RS03600 WP_000825433.1 672743..673528(+) (endA) [Streptococcus agalactiae strain YZ1605]
ATGAAAAGATTACATAAACTGTTTATAACCGTAATTGCTACATTAGGTATGTTGGGGGTAATGACCTTTGGTCTTCCAAC
GCAGCCGCAAAACGTAACACCGATAGTACATGCTGATGTCAATTCATCTGTTGATACGAGCCAGGAATTTCAAAATAATT
TAAAAAATGCTATTGGTAACCTACCATTTCAATATGTTAATGGTATTTATGAATTAAATAATAATCAGACAAATTTAAAT
GCTGATGTCAATGTTAAAGCGTATGTTCAAAATACAATTGACAATCAACAAAGACCATCAGCTGCTAATGCAATGCTTGA
TAGAACCATTCGTCAATATCAAAATCGCAGAGATACCACTCTTCCCGATGCAAATTGGAAACCATTAGGTTGGCATCAAG
TAGCTACTAATGACCATTATGGGCATGCAGTCGACAAGGGGCATTTAATTGCCTATGCTTTAGCTGGAAATTTCAAAGGC
TGGGATGCTTCCGTGTCAAATCCTCAAAATGTTGTCACACAAACAGCTCATTCCAACCAATCAAATCAAAAAATCAATCG
TGGACAAAATTATTATGAAAGCTTAGTTCGTAAGGCGGTTGACCAAAACAAACGTGTTCGTTACCGTGTAACTCCATTGT
ACCGTAATGATACTGATTTAGTTCCATTTGCAATGCACCTAGAAGCTAAATCACAAGATGGCACATTAGAATTTAATGTT
GCTATTCCAAACACACAAGCATCATATACTATGGATTATGCAACAGGAGAAATAACACTAAATTAA

Domains

Predicted by InterProScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(77-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

52.02

75.862

0.395
  endA Streptococcus pneumoniae D39

52.02

75.862

0.395
  endA Streptococcus pneumoniae R6

52.02

75.862

0.395
  endA Streptococcus pneumoniae TIGR4

52.02

75.862

0.395

Multiple sequence alignment