Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   RK93_RS01495 Genome accession   NZ_CP026072
Coordinates   314622..315395 (-) Length   257 a.a.
NCBI ID   WP_000055335.1    Uniprot ID   -
Organism   Staphylococcus aureus strain FDAARGOS_35     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 309622..320395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RK93_RS01460 (RK93_001460) - 309875..310645 (-) 771 WP_000473705.1 isoprenyl transferase -
  RK93_RS01465 (RK93_001465) frr 311018..311572 (-) 555 WP_001280006.1 ribosome recycling factor -
  RK93_RS01470 (RK93_001470) pyrH 311591..312313 (-) 723 WP_000057330.1 UMP kinase -
  RK93_RS01475 (RK93_001475) tsf 312450..313331 (-) 882 WP_000201387.1 translation elongation factor Ts -
  RK93_RS01480 (RK93_001480) - 313366..313479 (-) 114 WP_001789890.1 hypothetical protein -
  RK93_RS01485 (RK93_001485) rpsB 313513..314280 (-) 768 WP_000268484.1 30S ribosomal protein S2 -
  RK93_RS01490 (RK93_001490) - 314479..314571 (-) 93 WP_001790530.1 hypothetical protein -
  RK93_RS01495 (RK93_001495) codY 314622..315395 (-) 774 WP_000055335.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  RK93_RS01500 (RK93_001500) hslU 315420..316823 (-) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  RK93_RS01505 (RK93_001505) hslV 316889..317434 (-) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  RK93_RS01510 (RK93_001510) xerC 317431..318327 (-) 897 WP_001015597.1 tyrosine recombinase XerC -
  RK93_RS01515 (RK93_001515) trmFO 318744..320051 (-) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=223845 RK93_RS01495 WP_000055335.1 314622..315395(-) (codY) [Staphylococcus aureus strain FDAARGOS_35]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERIGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=223845 RK93_RS01495 WP_000055335.1 314622..315395(-) (codY) [Staphylococcus aureus strain FDAARGOS_35]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGAATAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(2-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

63.813

100

0.638
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.412

100

0.424