Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   NMB_RS05415 Genome accession   NC_003112
Coordinates   1053258..1053935 (+) Length   225 a.a.
NCBI ID   WP_002213447.1    Uniprot ID   Q9JZI3
Organism   Neisseria meningitidis MC58     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1048258..1058935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMB_RS05395 (NMB1034) leuD 1049063..1049704 (-) 642 WP_002222556.1 3-isopropylmalate dehydratase small subunit -
  NMB_RS05400 (NMB1035) - 1049766..1050020 (-) 255 WP_002213442.1 hypothetical protein -
  NMB_RS05405 (NMB1036) leuC 1050117..1051526 (-) 1410 WP_002219221.1 3-isopropylmalate dehydratase large subunit -
  NMB_RS05410 (NMB1037) gshA 1051786..1053135 (+) 1350 WP_002223737.1 glutamate--cysteine ligase -
  NMB_RS11930 - 1053109..1053231 (-) 123 WP_255294323.1 hypothetical protein -
  NMB_RS05415 (NMB1038) ysxA/radC 1053258..1053935 (+) 678 WP_002213447.1 RadC family protein Machinery gene
  NMB_RS05420 (NMB1039) - 1054008..1054733 (+) 726 WP_002213448.1 epoxyqueuosine reductase QueH -
  NMB_RS11935 - 1054756..1054884 (-) 129 WP_009347251.1 hypothetical protein -
  NMB_RS05425 (NMB1040) - 1054886..1056166 (+) 1281 WP_002219224.1 CAP domain-containing protein -
  NMB_RS05430 (NMB1041) hflX 1056171..1057349 (+) 1179 WP_002219225.1 GTPase HflX -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24939.75 Da        Isoelectric Point: 5.3782

>NTDB_id=22357 NMB_RS05415 WP_002213447.1 1053258..1053935(+) (ysxA/radC) [Neisseria meningitidis MC58]
MSIKQWPEGERPREKLLERGAAALSDAELLAILLRVGTRGMSAVDLARYLLQEFGSLGRLMSAEVGKLSAYKGMGTASFT
QFAVVREIGRRILAEELQESIVLSDPDTVADYLRFHLGQEKVEVSVALLLNRQNQLIAVRELSRGTVAENTIYIREIVKL
ALDEYADSLIIAHNHPGGSPEPSQEDIMFTRRLAQAMSLVDVSLLDHFIVTSQSVCSFRQLGLMP

Nucleotide


Download         Length: 678 bp        

>NTDB_id=22357 NMB_RS05415 WP_002213447.1 1053258..1053935(+) (ysxA/radC) [Neisseria meningitidis MC58]
ATGAGCATCAAGCAATGGCCGGAAGGCGAAAGACCCAGGGAAAAGCTGTTGGAACGCGGGGCGGCGGCGTTGAGTGATGC
CGAACTTTTGGCAATCCTGCTGCGCGTCGGCACGCGCGGAATGAGTGCGGTCGATTTGGCGCGTTATTTGCTGCAGGAGT
TCGGCAGTTTGGGGAGGCTGATGAGCGCGGAGGTCGGCAAACTGTCGGCATACAAAGGGATGGGGACGGCAAGTTTCACA
CAGTTTGCCGTGGTCAGGGAAATCGGGCGGCGGATATTGGCGGAAGAATTGCAGGAGAGCATCGTCCTGTCCGATCCGGA
TACGGTGGCCGATTATTTACGCTTTCATTTGGGGCAGGAAAAAGTCGAAGTCAGCGTCGCGCTGCTGCTGAACCGCCAAA
ACCAACTGATTGCGGTCAGAGAGCTGTCGCGCGGTACGGTTGCGGAAAACACGATTTACATCCGCGAAATCGTCAAACTG
GCATTGGACGAATATGCCGACAGCCTGATTATTGCGCACAACCATCCGGGCGGCTCGCCCGAACCTTCGCAGGAAGACAT
CATGTTCACAAGGCGGCTGGCACAGGCAATGTCGCTGGTCGATGTGTCGCTGCTCGACCATTTTATCGTTACCTCGCAAA
GCGTCTGTTCGTTCAGACAGCTCGGGTTGATGCCCTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(3-78)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9JZI3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

38.158

100

0.387
  radC Haemophilus influenzae Rd KW20

39.906

94.667

0.378

Multiple sequence alignment