Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   RK78_RS09225 Genome accession   NZ_CP026066
Coordinates   1831214..1831987 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain FDAARGOS_20     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1826214..1836987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RK78_RS09205 (RK78_009205) trmFO 1826557..1827864 (+) 1308 WP_000195249.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  RK78_RS09210 (RK78_009210) xerC 1828282..1829178 (+) 897 WP_001015609.1 tyrosine recombinase XerC -
  RK78_RS09215 (RK78_009215) hslV 1829175..1829720 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  RK78_RS09220 (RK78_009220) hslU 1829786..1831189 (+) 1404 WP_000379058.1 ATP-dependent protease ATPase subunit HslU -
  RK78_RS09225 (RK78_009225) codY 1831214..1831987 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  RK78_RS09230 (RK78_009230) - 1832038..1832130 (+) 93 WP_031788481.1 hypothetical protein -
  RK78_RS09235 (RK78_009235) rpsB 1832329..1833096 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  RK78_RS09240 (RK78_009240) - 1833130..1833243 (+) 114 WP_001791405.1 hypothetical protein -
  RK78_RS09245 (RK78_009245) tsf 1833278..1834159 (+) 882 WP_000201387.1 translation elongation factor Ts -
  RK78_RS09250 (RK78_009250) pyrH 1834296..1835018 (+) 723 WP_000057330.1 UMP kinase -
  RK78_RS09255 (RK78_009255) frr 1835037..1835591 (+) 555 WP_001280006.1 ribosome recycling factor -
  RK78_RS09260 (RK78_009260) - 1835964..1836734 (+) 771 WP_000473705.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=223348 RK78_RS09225 WP_000055337.1 1831214..1831987(+) (codY) [Staphylococcus aureus strain FDAARGOS_20]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=223348 RK78_RS09225 WP_000055337.1 1831214..1831987(+) (codY) [Staphylococcus aureus strain FDAARGOS_20]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGCGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACACGATG
ACTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCAAT
TGAACATATCTTTGAAGAACTTGGCGGTACAGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAGTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428

Multiple sequence alignment