Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   A6J74_RS25455 Genome accession   NZ_CP020437
Coordinates   4468529..4469308 (+) Length   259 a.a.
NCBI ID   WP_000421291.1    Uniprot ID   A0A1V6LJD3
Organism   Bacillus sp. FDAARGOS_235     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 4463529..4474308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J74_RS25435 (A6J74_25480) trmFO 4464183..4465487 (+) 1305 WP_000212000.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  A6J74_RS25440 (A6J74_25485) xerC 4465553..4466452 (+) 900 WP_001101240.1 tyrosine recombinase XerC -
  A6J74_RS25445 (A6J74_25490) hslV 4466495..4467037 (+) 543 WP_000526274.1 ATP-dependent protease proteolytic subunit HslV -
  A6J74_RS25450 (A6J74_25495) hslU 4467060..4468451 (+) 1392 WP_000550076.1 ATP-dependent protease ATPase subunit HslU -
  A6J74_RS25455 (A6J74_25500) codY 4468529..4469308 (+) 780 WP_000421291.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  A6J74_RS25460 (A6J74_25505) rpsB 4469656..4470357 (+) 702 WP_000111485.1 30S ribosomal protein S2 -
  A6J74_RS25465 (A6J74_25510) tsf 4470461..4471348 (+) 888 WP_001018579.1 translation elongation factor Ts -
  A6J74_RS25470 (A6J74_25515) pyrH 4471415..4472137 (+) 723 WP_000042662.1 UMP kinase -
  A6J74_RS25475 (A6J74_25520) frr 4472140..4472697 (+) 558 WP_000531505.1 ribosome recycling factor -
  A6J74_RS25480 (A6J74_25525) uppS 4472783..4473559 (+) 777 WP_000971308.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28788.03 Da        Isoelectric Point: 4.7947

>NTDB_id=223080 A6J74_RS25455 WP_000421291.1 4468529..4469308(+) (codY) [Bacillus sp. FDAARGOS_235]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NVTETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=223080 A6J74_RS25455 WP_000421291.1 4468529..4469308(+) (codY) [Bacillus sp. FDAARGOS_235]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGATACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAACGAGCGTATGAAACAAATGCTTGCAGAGCGTCAATTCCCAGAAGAATATACGCAAAGCTTATTC
AATGTAACGGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAGAGAATTATTCGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTGTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATCCTTGCTGAATACAGTTCAACTGTAGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATTAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCACATTTTCGAAGAGTTAAACGGAACAGAAGGTCTACTTGTTGCAAGTAAAATTGCTGATCGTGTAGGAATCACTC
GTTCTGTGATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATCGAGTCTCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTTTTACATGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V6LJD3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.853

100

0.819
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.275

98.456

0.456

Multiple sequence alignment