Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   A6J72_RS07660 Genome accession   NZ_CP020433
Coordinates   1527191..1528951 (+) Length   586 a.a.
NCBI ID   WP_105255943.1    Uniprot ID   -
Organism   Streptococcus intermedius strain FDAARGOS_233     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1522191..1533951
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J72_RS07640 (A6J72_07630) - 1522948..1523358 (+) 411 WP_009569319.1 peptide deformylase -
  A6J72_RS07645 (A6J72_07635) - 1523625..1524812 (+) 1188 WP_009569318.1 NADH-dependent flavin oxidoreductase -
  A6J72_RS07650 (A6J72_07640) - 1524984..1525442 (+) 459 WP_082312140.1 MarR family winged helix-turn-helix transcriptional regulator -
  A6J72_RS07655 (A6J72_07645) rcrP 1525435..1527201 (+) 1767 WP_082312141.1 ABC transporter ATP-binding protein Regulator
  A6J72_RS07660 (A6J72_07650) rcrQ 1527191..1528951 (+) 1761 WP_105255943.1 ABC transporter ATP-binding protein Regulator
  A6J72_RS07665 (A6J72_07655) - 1529036..1529449 (+) 414 WP_003075980.1 cupin domain-containing protein -
  A6J72_RS07670 (A6J72_07660) - 1529598..1530995 (-) 1398 WP_082312142.1 glycoside hydrolase family 1 protein -
  A6J72_RS07675 (A6J72_07665) celB 1531138..1532406 (+) 1269 WP_020999086.1 PTS cellobiose transporter subunit IIC -
  A6J72_RS07680 (A6J72_07670) - 1532440..1533165 (+) 726 WP_105255944.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 65213.46 Da        Isoelectric Point: 6.5141

>NTDB_id=223027 A6J72_RS07660 WP_105255943.1 1527191..1528951(+) (rcrQ) [Streptococcus intermedius strain FDAARGOS_233]
MENKKSSLFSQVKPYIKGFQFPLLVAFVGVMLSSVITVYGPVKLKEITNLITEGMRSRIDLKAISNIALFLAVLYVVGAV
LNYMQSFIISSVVQHFSKRLRTAIAEKINKLPLRYFDSHSQGDTLSRVTNDVDTVGQSLNQSLGTVISSSLLLIAVLFMM
FYNNVVLSFVTIGSVLIGFVFVALIMGKSQRFFRAQQENLASVNGYVEEMYSGHNVIVSYNATEESKKAFQMLNTNLYNS
MWKSQFISGIMMPLMIFTGNFGYVMVVLVGASMALNGDVTMGTIVAFMVYVRTFSQPLSQIAQGITTLQQASAAMGRVFE
FLAEPEMENDEHKSQQLAILKGDVTFDNVFFGYNPDRTIIHDFSAKAKAGQKIAIVGPTGAGKTTIVNLLMKFYEIEKGR
ITIDGVDTKQMKRSEVHDAFSMVLQDTWLFEGTIKENLIYNQKNISDEAVVAATKAVGVHHFIKTLPKGYDTVLDDTVSL
SVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIRNADLILVMRDGNIIEQGN
HNQLMEENGFYADLYNSQFDEEAEYA

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=223027 A6J72_RS07660 WP_105255943.1 1527191..1528951(+) (rcrQ) [Streptococcus intermedius strain FDAARGOS_233]
ATGGAAAATAAAAAATCATCTTTATTTAGCCAAGTGAAACCCTATATCAAAGGATTTCAGTTTCCATTGCTTGTTGCGTT
TGTGGGAGTAATGCTATCTAGTGTTATCACGGTTTATGGTCCGGTCAAATTAAAAGAAATTACCAATCTCATCACAGAAG
GAATGAGAAGTCGGATTGATCTGAAGGCTATCTCTAATATTGCTCTTTTCTTAGCAGTTTTATATGTGGTGGGTGCTGTA
TTAAATTATATGCAATCCTTTATTATTTCGTCCGTCGTTCAGCATTTTTCAAAACGTTTACGGACAGCCATTGCGGAGAA
AATTAATAAATTACCCTTGCGGTATTTTGATAGTCATTCGCAAGGGGACACTCTTTCACGAGTCACTAATGACGTGGATA
CTGTCGGACAATCTTTGAACCAAAGTTTAGGAACAGTGATTTCATCAAGTTTGCTTCTCATTGCTGTTCTCTTTATGATG
TTTTATAACAACGTGGTTCTATCCTTTGTAACGATTGGATCGGTTTTGATTGGTTTTGTCTTTGTTGCGTTGATTATGGG
CAAATCACAACGGTTTTTCCGCGCACAACAAGAGAATCTTGCTAGTGTCAATGGATATGTGGAAGAGATGTATTCTGGTC
ACAATGTCATTGTCAGCTACAATGCTACCGAGGAATCAAAAAAAGCCTTTCAAATGCTTAATACGAATCTTTATAATAGT
ATGTGGAAGTCCCAATTTATTTCTGGGATTATGATGCCGTTAATGATATTTACAGGGAACTTCGGTTATGTTATGGTCGT
ATTGGTTGGAGCGAGCATGGCATTGAATGGTGATGTCACGATGGGGACGATTGTTGCCTTTATGGTATATGTACGGACTT
TTTCTCAACCATTGTCCCAAATTGCACAAGGGATTACTACTCTTCAACAGGCTAGTGCTGCTATGGGGCGTGTATTTGAG
TTTTTAGCAGAGCCGGAAATGGAAAATGATGAGCACAAGTCTCAACAGCTCGCAATTTTAAAGGGTGATGTTACCTTTGA
TAATGTATTCTTTGGCTACAATCCGGATCGAACAATTATTCATGATTTTTCTGCCAAGGCAAAAGCCGGCCAAAAGATTG
CTATTGTTGGTCCGACTGGTGCTGGGAAAACGACGATTGTCAATCTGTTGATGAAATTTTATGAAATTGAGAAAGGGCGG
ATTACCATTGATGGTGTTGATACCAAGCAGATGAAACGTTCTGAAGTGCATGATGCTTTCTCAATGGTTCTTCAAGACAC
TTGGTTATTTGAGGGAACGATTAAAGAAAATTTGATTTACAATCAGAAGAATATTTCTGATGAAGCGGTTGTGGCAGCGA
CTAAAGCTGTCGGGGTTCATCACTTTATCAAGACTTTGCCAAAAGGATACGATACAGTGTTGGATGACACAGTCAGTCTT
TCTGTTGGGCAAAAGCAATTGCTGACCATCGCGCGTGCACTTCTTAAGGATGCTCCCTTACTTATCTTGGATGAAGCGAC
TTCATCTGTTGATACGCGGACAGAAGAATTGATCCAAAAAGCGATGGATAAGTTGATGGAGGGAAGGACTTCTTTCGTCA
TTGCTCACCGCTTGTCGACCATTCGTAATGCTGATTTGATTTTGGTCATGCGTGATGGTAATATCATTGAACAAGGAAAT
CACAATCAATTGATGGAAGAAAATGGCTTCTATGCTGATCTTTACAATAGTCAATTCGATGAAGAGGCAGAGTATGCGTA
A

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(23-298)

ABC transporter (ABC_tran)

(361-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

71.478

99.317

0.71

Multiple sequence alignment