Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   A6J68_RS05995 Genome accession   NZ_CP020432
Coordinates   1100729..1101586 (+) Length   285 a.a.
NCBI ID   WP_070469378.1    Uniprot ID   -
Organism   Streptococcus sp. 'group B' strain FDAARGOS_229     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1095729..1106586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J68_RS05965 (A6J68_05930) - 1096045..1096926 (+) 882 WP_000919083.1 F0F1 ATP synthase subunit gamma -
  A6J68_RS05970 (A6J68_05935) atpD 1097000..1098406 (+) 1407 WP_000094375.1 F0F1 ATP synthase subunit beta -
  A6J68_RS05975 (A6J68_05940) - 1098419..1098832 (+) 414 WP_000068055.1 F0F1 ATP synthase subunit epsilon -
  A6J68_RS05980 (A6J68_05945) - 1098897..1099127 (+) 231 WP_000602601.1 DUF1146 family protein -
  A6J68_RS05985 (A6J68_05950) murA 1099190..1100461 (+) 1272 WP_000357880.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  A6J68_RS05990 (A6J68_05955) - 1100463..1100654 (+) 192 WP_000168511.1 DNA-directed RNA polymerase subunit beta -
  A6J68_RS05995 (A6J68_05960) endA 1100729..1101586 (+) 858 WP_070469378.1 DNA/RNA non-specific endonuclease Machinery gene
  A6J68_RS06000 (A6J68_05965) pheS 1101877..1102917 (+) 1041 WP_000365655.1 phenylalanine--tRNA ligase subunit alpha -
  A6J68_RS06005 (A6J68_05970) - 1103000..1103520 (+) 521 Protein_1082 GNAT family N-acetyltransferase -
  A6J68_RS06010 (A6J68_05975) pheT 1103574..1105979 (+) 2406 WP_000961583.1 phenylalanine--tRNA ligase subunit beta -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 31367.31 Da        Isoelectric Point: 10.3810

>NTDB_id=222955 A6J68_RS05995 WP_070469378.1 1100729..1101586(+) (endA) [Streptococcus sp. 'group B' strain FDAARGOS_229]
MTKKQKQITASIVTLLFSLLAIGLGESKSLPNDHILKQVTDLIISNESGKNTSLKNISGTPSRELSESVLTSNVKKQLGT
NIAWNQSGAFIINQNKTDLNAKVSSAPYAINEIKKVNNQIVPTKANALLTKATRQYRNREETGNGRTYWKPAGWHQINGL
KGSYNHAVDRGHLIGYALVGSLRGFDASTSNPENIATQAAWANQANSNQSTGQNYYETLVRKALDRHKTVRYRVTLIYDR
DNLLSSGSHIEAKSSDGSLEFNVFIPNVQSGLLFDYATGKVKQTK

Nucleotide


Download         Length: 858 bp        

>NTDB_id=222955 A6J68_RS05995 WP_070469378.1 1100729..1101586(+) (endA) [Streptococcus sp. 'group B' strain FDAARGOS_229]
ATGACAAAAAAACAAAAACAAATAACAGCTTCGATTGTAACTTTGCTTTTTTCATTACTGGCAATAGGGTTAGGTGAAAG
TAAATCTTTGCCTAATGATCACATTTTAAAACAGGTGACAGATTTAATTATTAGTAATGAATCTGGCAAAAATACTTCCC
TTAAAAATATATCAGGAACCCCTAGTAGAGAGTTATCTGAATCTGTTTTGACTAGCAATGTTAAAAAACAATTGGGAACA
AATATAGCTTGGAACCAGTCAGGTGCTTTTATCATTAATCAAAATAAAACAGATTTGAATGCTAAAGTGTCAAGTGCACC
ATATGCTATTAATGAAATAAAGAAGGTTAATAACCAAATTGTTCCAACTAAAGCAAATGCCTTATTAACAAAAGCAACTC
GTCAATATCGAAATCGAGAAGAAACAGGGAATGGTAGAACTTATTGGAAACCAGCTGGATGGCATCAGATAAATGGATTA
AAAGGGAGCTATAACCACGCTGTGGACAGAGGCCATTTAATTGGTTATGCTTTAGTAGGGAGTTTAAGAGGATTTGATGC
CTCCACAAGTAATCCTGAAAATATTGCCACACAAGCAGCTTGGGCAAACCAAGCTAATAGCAACCAATCAACAGGGCAAA
ATTATTATGAAACTTTAGTTCGTAAAGCATTGGATCGTCATAAAACTGTTAGGTATCGTGTGACTTTAATTTATGACAGA
GATAATCTTTTATCTTCGGGATCACATATTGAGGCTAAATCTTCAGATGGAAGTTTAGAATTTAATGTTTTTATTCCTAA
TGTACAATCGGGATTATTATTTGATTATGCAACAGGAAAAGTGAAGCAGACAAAGTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(87-243)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

65.948

81.404

0.537
  endA Streptococcus pneumoniae D39

65.948

81.404

0.537
  endA Streptococcus pneumoniae R6

65.948

81.404

0.537
  endA Streptococcus pneumoniae TIGR4

65.948

81.404

0.537

Multiple sequence alignment