Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   C2H97_RS17230 Genome accession   NZ_CP026038
Coordinates   3277225..3277674 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis PY79 strain PK1_3     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 3272225..3282674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H97_RS17190 (C2H97_17205) ctaE 3272242..3272865 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  C2H97_RS17195 (C2H97_17210) ctaF 3272868..3273200 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  C2H97_RS17200 (C2H97_17215) ctaG 3273228..3274121 (+) 894 WP_015715837.1 cytochrome c oxidase assembly factor CtaG -
  C2H97_RS17205 (C2H97_17220) ylbA 3274153..3274515 (-) 363 WP_003232238.1 YugN family protein -
  C2H97_RS17210 (C2H97_17225) ylbB 3274655..3275101 (+) 447 WP_003221362.1 CBS domain-containing protein -
  C2H97_RS17215 (C2H97_17230) ylbC 3275185..3276225 (+) 1041 WP_120028059.1 CAP domain-containing protein -
  C2H97_RS17220 (C2H97_17235) ylbD 3276456..3276854 (+) 399 WP_120028060.1 YlbD family protein -
  C2H97_RS17225 (C2H97_17240) ylbE 3276870..3277109 (+) 240 WP_003232231.1 YlbE-like family protein -
  C2H97_RS17230 (C2H97_17245) ylbF 3277225..3277674 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  C2H97_RS17235 (C2H97_17250) ylbG 3277729..3278001 (+) 273 WP_009967171.1 YlbG family protein -
  C2H97_RS17240 (C2H97_17255) rsmD 3278324..3278878 (+) 555 WP_120028061.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  C2H97_RS17245 (C2H97_17260) coaD 3278883..3279368 (+) 486 WP_120028062.1 pantetheine-phosphate adenylyltransferase -
  C2H97_RS17250 (C2H97_17265) spoVV 3279379..3280605 (-) 1227 WP_014479716.1 dipicolinic acid transporter SpoVV -
  C2H97_RS17255 (C2H97_17270) ylbK 3280786..3281568 (+) 783 WP_003232221.1 patatin family protein -
  C2H97_RS17260 (C2H97_17275) sepM 3281570..3282595 (+) 1026 WP_003245451.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=222865 C2H97_RS17230 WP_003221370.1 3277225..3277674(+) (ylbF) [Bacillus subtilis PY79 strain PK1_3]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=222865 C2H97_RS17230 WP_003221370.1 3277225..3277674(+) (ylbF) [Bacillus subtilis PY79 strain PK1_3]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAATGACAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment