Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   A6J30_RS08315 Genome accession   NZ_CP020427
Coordinates   1712913..1713638 (+) Length   241 a.a.
NCBI ID   WP_005459005.1    Uniprot ID   Q87TC3
Organism   Vibrio parahaemolyticus strain FDAARGOS_191     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1707913..1718638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J30_RS08300 (A6J30_08030) - 1709016..1711337 (+) 2322 WP_005478620.1 Tex family protein -
  A6J30_RS08305 (A6J30_08035) - 1711473..1711937 (-) 465 WP_005459035.1 hypothetical protein -
  A6J30_RS08310 (A6J30_08040) bioH 1712061..1712828 (-) 768 WP_005489494.1 pimeloyl-ACP methyl ester esterase BioH -
  A6J30_RS08315 (A6J30_08045) comF 1712913..1713638 (+) 726 WP_005459005.1 amidophosphoribosyltransferase Machinery gene
  A6J30_RS08320 (A6J30_08050) nfuA 1713736..1714320 (+) 585 WP_005458964.1 Fe-S biogenesis protein NfuA -
  A6J30_RS08325 (A6J30_08055) nudE 1714541..1715110 (+) 570 WP_005459019.1 ADP compounds hydrolase NudE -
  A6J30_RS08330 (A6J30_08060) cysQ 1715152..1715979 (+) 828 WP_005458987.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  A6J30_RS08335 (A6J30_08065) - 1716265..1717026 (-) 762 WP_005459010.1 type II secretion system protein N -
  A6J30_RS08340 (A6J30_08070) - 1717028..1717519 (-) 492 WP_005458943.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27770.91 Da        Isoelectric Point: 8.9991

>NTDB_id=222820 A6J30_RS08315 WP_005459005.1 1712913..1713638(+) (comF) [Vibrio parahaemolyticus strain FDAARGOS_191]
MLSHHWQNIMHRVLSSQCGLCRFPIQATAQPNALRWCDHCYQYLTPVKRCQRCGLSLKAEEANIESICGECLSEPPPWQR
LFTLGDYDFPLSREVQRFKDHGQTWHVRALTQLLAQRISTPAPLITTVPLHWQRYFYRGFNQSDILARHLAGHLNVRFDN
HVFRRVKHVQSQRGYKKSSREQNLKGAFTLNQPPKYNHVAIVDDVVTTGSTVRQLCHLLLEVGVETVDIYCICRTPAPGA
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=222820 A6J30_RS08315 WP_005459005.1 1712913..1713638(+) (comF) [Vibrio parahaemolyticus strain FDAARGOS_191]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTGCTCAGCAGTCAATGCGGTTTATGTCGCTTCCCGATTCAGGC
TACCGCTCAACCCAATGCGCTGCGTTGGTGTGATCACTGTTATCAATATCTTACGCCAGTAAAACGCTGCCAACGTTGTG
GATTGAGCTTAAAAGCAGAGGAAGCGAATATAGAGAGTATTTGCGGCGAGTGCCTCTCCGAGCCTCCACCGTGGCAACGG
CTATTTACCTTGGGAGACTACGACTTTCCGCTATCTCGAGAAGTACAACGCTTCAAAGATCACGGACAAACATGGCATGT
TCGCGCTTTAACGCAATTGCTTGCCCAGCGCATTTCAACTCCCGCTCCGCTTATCACCACAGTGCCATTGCACTGGCAAC
GCTACTTTTATCGAGGCTTTAATCAGAGCGACATACTGGCGCGACATTTGGCTGGTCACCTTAATGTGAGGTTTGATAAT
CACGTGTTTCGCCGCGTAAAACACGTCCAGTCGCAGCGTGGGTACAAGAAATCCAGCCGAGAACAGAATTTAAAAGGCGC
TTTCACCTTAAATCAGCCACCAAAGTATAACCACGTCGCAATCGTAGATGATGTGGTCACGACGGGAAGCACGGTTCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAACCGTCGATATTTACTGCATCTGCAGAACCCCTGCTCCTGGTGCT
GTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(146-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87TC3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

72.199

100

0.722
  comF Vibrio cholerae strain A1552

49.16

98.755

0.485

Multiple sequence alignment