Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   C2H93_RS04440 Genome accession   NZ_CP026036
Coordinates   873180..874097 (+) Length   305 a.a.
NCBI ID   WP_021479549.1    Uniprot ID   -
Organism   Bacillus subtilis strain PK5_16     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 868180..879097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H93_RS04425 (C2H93_04430) trpS 868762..869754 (-) 993 WP_003245134.1 tryptophan--tRNA ligase -
  C2H93_RS04430 (C2H93_04440) oppA 870497..872134 (+) 1638 WP_021479550.1 oligopeptide ABC transporter substrate-binding protein OppA -
  C2H93_RS04435 (C2H93_04445) oppB 872241..873176 (+) 936 WP_014479444.1 oligopeptide ABC transporter permease OppB -
  C2H93_RS04440 (C2H93_04450) amiD 873180..874097 (+) 918 WP_021479549.1 oligopeptide ABC transporter permease OppC Regulator
  C2H93_RS04445 (C2H93_04455) oppD 874102..875178 (+) 1077 WP_077670618.1 oligopeptide ABC transporter ATP-binding protein OppD -
  C2H93_RS04450 (C2H93_04460) oppF 875180..876097 (+) 918 WP_003239287.1 oligopeptide ABC transporter ATP-binding protein OppF -
  C2H93_RS04455 (C2H93_04465) yjbB 876204..877421 (+) 1218 WP_080474463.1 MFS transporter -
  C2H93_RS04460 (C2H93_04470) yjbC 877585..878163 (+) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  C2H93_RS04465 (C2H93_04475) spx 878344..878739 (+) 396 WP_014476435.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33621.12 Da        Isoelectric Point: 10.2873

>NTDB_id=222471 C2H93_RS04440 WP_021479549.1 873180..874097(+) (amiD) [Bacillus subtilis strain PK5_16]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIMLIILMAIFAPVFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=222471 C2H93_RS04440 WP_021479549.1 873180..874097(+) (amiD) [Bacillus subtilis strain PK5_16]
ATGCAGAACATTCCAAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCATGCTCATTA
TCCTTATGGCAATTTTTGCGCCGGTGTTCTCAAGGTATGATTATTCAACTACTAATCTTTTAAATGCGGATAAGCCGCCT
TCAAAAGATCACTGGTTCGGCACAGATGATCTTGGACGGGACATTTTCGTCCGTACATGGGTAGGAGCGCGAATCTCAAT
CTTTATCGGTGTCGCAGCCGCTGTTCTTGATTTGCTGATCGGTGTCATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGCA
GAACGGACGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACAGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAGTATGTGCTTGCTTCACAGACACTGGGTGCAAAAACATCCCGTCTTCTGTTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCAATTTTCACAGAAGCC
TTTTTAAGCTATTTGGGACTTGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGTTTCAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.599

100

0.361
  amiD Streptococcus thermophilus LMD-9

35.599

100

0.361

Multiple sequence alignment