Detailed information NTG0222346

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: C2H96_RS08490
• Genome accession: NZ_CP026035
• Coordinates: 1691928..1693103 (-)
• Length: 391 a.a.
• NCBI ID: WP_080624175.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain PK5_68
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 1686928..1698103

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C2H96_RS08460 (C2H96_08405)	yddQ	1687656..1688198 (-)	543	WP_003234256.1	cysteine hydrolase family protein	-
C2H96_RS08465 (C2H96_08410)	lrpB	1688313..1688762 (+)	450	WP_120027814.1	transcriptional regulator LrpB	-
C2H96_RS08470 (C2H96_08415)	lrpA	1688885..1689295 (-)	411	WP_003246601.1	transcriptional regulator LrpA	-
C2H96_RS08475 (C2H96_08420)	yddN	1689556..1690575 (+)	1020	WP_120027812.1	LLM class flavin-dependent oxidoreductase	-
C2H96_RS08480 (C2H96_08425)	-	1691062..1691769 (-)	708	WP_080624177.1	hypothetical protein	-
C2H96_RS08485 (C2H96_08430)	-	1691852..1691971 (-)	120	WP_080624176.1	phosphatase	-
C2H96_RS08490 (C2H96_08435)	rapF	1691928..1693103 (-)	1176	WP_080624175.1	Rap family tetratricopeptide repeat protein	Regulator
C2H96_RS08495 (C2H96_08440)	-	1693373..1695121 (+)	1749	WP_120027811.1	DUF4209 domain-containing protein	-
C2H96_RS08500 (C2H96_08445)	-	1695187..1695573 (-)	387	WP_060563130.1	cystatin-like fold lipoprotein	-
C2H96_RS08505 (C2H96_08450)	-	1695627..1696133 (-)	507	WP_120027810.1	hypothetical protein	-
C2H96_RS08510 (C2H96_08455)	cwlT	1696148..1697137 (-)	990	WP_120027809.1	bifunctional lytic transglycosylase/C40 family peptidase	-

Sequence

Protein

• Length: 391 a.a.
• Molecular weight: 46471.11 Da
• Isoelectric Point: 5.2971

>NTDB_id=222346 C2H96_RS08490 WP_080624175.1 1691928..1693103(-) (rapF) [Bacillus subtilis strain PK5_68]
MRGVFLDKDKIPYDLVTKKLNEWYTSIKNDQVEKAEIIKTEVEKELLNMEENQDALLYYQLLEFRHEIMLSYMKSKEIEK
LHNAYETIKEIEEQGQLTGMLEYYYYFFKGMYEFRRKELTTAISAYRIAESKLSEVEDEIEKAEFFFKVSYVYYYMKQTY
FSMNYANRALKIFREYEEYAVQTLRCQFIVAGNLIDSLEYECALQQFLNSLELAKKNNIEHLIAMSHMNIGICYDELKEY
KKASQHLVLALEIFEKSKHSFLTKTLFTLTYVEAKQQNYDVALSYFRKGRFIADKSNDKEYSAKFKILEGLFFSDGDIQL
IKNAFSYLASRKMFADVENFSIEVADYFHEQGNLMLSNEYYRMSIEARRKIKKGEIIDENQPDSIGSSGIR

Nucleotide

• Length: 1176 bp

>NTDB_id=222346 C2H96_RS08490 WP_080624175.1 1691928..1693103(-) (rapF) [Bacillus subtilis strain PK5_68]
TTGCGGGGTGTTTTCTTAGATAAAGATAAAATTCCGTACGACTTAGTCACGAAAAAATTAAATGAATGGTATACATCAAT
AAAAAATGATCAAGTTGAAAAAGCAGAGATTATAAAAACAGAAGTAGAGAAAGAATTGCTAAACATGGAAGAAAACCAAG
ATGCCCTTTTATATTATCAGCTATTAGAATTTAGACATGAGATAATGCTGAGTTATATGAAATCTAAGGAAATAGAAAAA
CTCCATAATGCTTATGAGACCATAAAAGAAATTGAAGAACAAGGGCAATTAACTGGCATGTTGGAATACTATTATTACTT
CTTTAAGGGAATGTACGAGTTTAGACGTAAAGAATTAACTACGGCAATAAGTGCCTATCGAATAGCTGAATCAAAGTTGT
CGGAAGTTGAGGATGAAATAGAAAAAGCAGAGTTTTTTTTCAAAGTGTCCTATGTATATTATTATATGAAACAAACGTAT
TTTTCCATGAATTATGCCAATCGGGCGTTAAAAATATTTAGAGAGTATGAAGAATATGCTGTCCAGACTCTGCGTTGTCA
ATTTATTGTAGCGGGAAACTTAATTGACTCATTAGAGTATGAATGCGCTTTGCAACAATTTTTAAATTCCTTGGAACTTG
CCAAGAAAAATAACATAGAGCATTTAATTGCAATGTCACACATGAATATTGGGATTTGTTATGATGAATTGAAGGAATAT
AAAAAGGCTTCACAACATTTAGTCTTAGCGTTAGAAATTTTCGAAAAATCAAAACATAGTTTCCTAACAAAGACTTTATT
CACTTTAACGTATGTTGAAGCAAAACAACAAAATTATGATGTTGCTTTGTCATACTTTAGGAAAGGGCGATTTATTGCCG
ATAAAAGTAATGATAAGGAATACTCAGCGAAATTCAAAATATTAGAGGGATTATTTTTTTCTGATGGTGATATTCAATTA
ATAAAGAATGCATTTTCATATCTGGCTTCGAGAAAAATGTTTGCTGATGTTGAAAATTTTTCAATTGAAGTCGCTGATTA
TTTTCATGAACAAGGAAATTTAATGCTCTCTAATGAATATTATCGTATGAGTATTGAAGCAAGACGAAAAATTAAAAAAG
GAGAGATTATTGATGAAAATCAGCCGGATTCTATTGGCAGCAGTGGTATTAGGTAG

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (10-70)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	38.525	93.606	0.361