Detailed information NTG0222339

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: A6J62_RS14630
• Genome accession: NZ_CP020408
• Coordinates: 1977055..1978062 (-)
• Length: 335 a.a.
• NCBI ID: WP_000116737.1
• Uniprot ID: O51804
• Organism: Vibrio cholerae strain FDAARGOS_223
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1972055..1983062

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A6J62_RS14620 (A6J62_14480)	cysM	1973219..1974106 (+)	888	WP_001279365.1	cysteine synthase CysM	-
A6J62_RS14625 (A6J62_14485)	mutS	1974374..1976962 (+)	2589	WP_001894770.1	DNA mismatch repair protein MutS	-
A6J62_RS14630 (A6J62_14490)	rpoS	1977055..1978062 (-)	1008	WP_000116737.1	RNA polymerase sigma factor RpoS	Regulator
A6J62_RS14635 (A6J62_14495)	nlpD	1978136..1979071 (-)	936	WP_000177568.1	murein hydrolase activator NlpD	-
A6J62_RS14640 (A6J62_14500)	-	1979071..1979697 (-)	627	WP_000002982.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
A6J62_RS14645 (A6J62_14505)	surE	1979690..1980442 (-)	753	WP_000698379.1	5'/3'-nucleotidase SurE	-
A6J62_RS14650 (A6J62_14510)	truD	1980444..1981529 (-)	1086	WP_000129752.1	tRNA pseudouridine(13) synthase TruD	-
A6J62_RS14655 (A6J62_14515)	ispF	1981559..1982035 (-)	477	WP_000619209.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
A6J62_RS14660 (A6J62_14520)	ispD	1982032..1982730 (-)	699	WP_001061951.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
A6J62_RS14665 (A6J62_14525)	ftsB	1982727..1983011 (-)	285	WP_001263189.1	cell division protein FtsB	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38534.39 Da
• Isoelectric Point: 4.3648

>NTDB_id=222339 A6J62_RS14630 WP_000116737.1 1977055..1978062(-) (rpoS) [Vibrio cholerae strain FDAARGOS_223]
MSVSNTVTKVEEFDFEDEALEVLETDAELTSDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN

Nucleotide

• Length: 1008 bp

>NTDB_id=222339 A6J62_RS14630 WP_000116737.1 1977055..1978062(-) (rpoS) [Vibrio cholerae strain FDAARGOS_223]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATGC
CGAGCTCACCAGTGATGAAGAATTAGTTGCTGTTGAAGGGGCAAGTGAAGACGTTCGTGAAGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGTGATGAAGCCGCACGTAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCGATTCATGTCGTCAAAGAGCTGAACATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACACCAGAAGAAATTGCTCTTGAGTTAGACCGACCTGTCGATGATGTCACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACGCCAATTGGTGGGGATGGAGATAAGGCACTGCTGGATATTTTGCCA
GACTCTCACAATGCCGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAACTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCGCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAAGTGGGTC
GTGAGATCAATCTCACTCGTGAGCGTGTTCGCCAAATCCAAGTGGAAGGTCTACGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCGCTGTTTAACGTCGAATACGACAACTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (263-316)

• Sigma-70 region 3 (Sigma70_r3) (175-249)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (57-90)

• Sigma-70 region 2 (Sigma70_r2) (95-164)

3D structure

• AlphaFold DB: O51804

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	100	100	1