Detailed information NTG0222298

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: A6J61_RS04855
• Genome accession: NZ_CP020406
• Coordinates: 1004142..1006529 (+)
• Length: 795 a.a.
• NCBI ID: WP_070815398.1
• Uniprot ID: -
• Organism: Staphylococcus lugdunensis strain FDAARGOS_222
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 999142..1011529

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A6J61_RS04830 (A6J61_12125)	-	999500..999640 (+)	141	WP_002458939.1	SAS049 family protein	-
A6J61_RS04835 (A6J61_04810)	-	999842..1000843 (-)	1002	WP_002478089.1	LLM class flavin-dependent oxidoreductase	-
A6J61_RS04840 (A6J61_04815)	-	1001073..1002215 (+)	1143	WP_002458941.1	cysteine desulfurase family protein	-
A6J61_RS04845 (A6J61_04820)	mnmA	1002215..1003327 (+)	1113	WP_002458942.1	tRNA 2-thiouridine(34) synthase MnmA	-
A6J61_RS04850 (A6J61_04825)	-	1003469..1004140 (+)	672	WP_070648439.1	lipopolysaccharide assembly protein LapB	-
A6J61_RS04855 (A6J61_04830)	recD2	1004142..1006529 (+)	2388	WP_070815398.1	ATP-dependent RecD-like DNA helicase	Machinery gene
A6J61_RS04860 (A6J61_04835)	alaS	1006797..1009427 (+)	2631	WP_070648443.1	alanine--tRNA ligase	-
A6J61_RS04865 (A6J61_04840)	-	1009493..1009753 (+)	261	WP_002458946.1	IreB family regulatory phosphoprotein	-
A6J61_RS04870 (A6J61_04845)	ruvX	1009757..1010185 (+)	429	WP_070481250.1	Holliday junction resolvase RuvX	-
A6J61_RS04875 (A6J61_04850)	-	1010198..1010506 (+)	309	WP_002458948.1	DUF1292 domain-containing protein	-
A6J61_RS04880 (A6J61_04855)	-	1010868..1011509 (+)	642	WP_002478093.1	O-methyltransferase	-

Sequence

Protein

• Length: 795 a.a.
• Molecular weight: 89640.44 Da
• Isoelectric Point: 4.8907

>NTDB_id=222298 A6J61_RS04855 WP_070815398.1 1004142..1006529(+) (recD2) [Staphylococcus lugdunensis strain FDAARGOS_222]
MDNPTLFEPTMLKGTVEVILFQNQDNFYTVLKVDTIESNESFDTMPTVVGFFPNIVEGDVYTFKGQVVAHPKYGKQLKAD
TFEKELPQTKDAIITYLSSDLFKGIGKKTAQNIVNTLGENAINDILAHPDILTKVSNLSKKKQEQIAQQIAANQESEKIM
IHLHDLGFGPKLSMAIYQFYQSETINVVDNNPYKLVYDIKGIGFNKADTLARNIGIDFNDPERLKAGILFTLEEECIKQG
HTYLPTETILKSAQTMLSTQGDEIIEIHQLEEMLQILMEEDKLILDQQKIAIPSLYYSELKSVQNLYRILTHTHKLNELE
QSDLQLHIGEIEDSNEVHYAASQKEALQTAINSKIMLLTGGPGTGKTTVIKGIIELYAEIHGLSLNYADYTDDDFPVVLA
APTGRASKRLQEATGLEAMTIHRLIGWNQDTQPEDILDNEIKAKLIIIDEMSMVDTWLFHQFLNAVPLDAQIVFVGDEDQ
LPSVGPGQVFKDLIQSKKIPRVNLTEVYRQQDGSSIIELAHHMKQNESIDITKRYHDRSFINCSAEQIPDVVKKVVSSAV
SKGYDMSDIQVLAPMYKGSAGIKRLNQILQTILNPKEPDAREIEFGDAAFRKGDKVLQLVNRPNDNIFNGDIGIIVGIFW
AKENALNKDVIIVDFDGNEITFTRQDLIELTHAYCTSIHKSQGSEFPIVIMPVVKQYFRMLQKPILYTGLTRAKQSLVLL
GDPQAFDIGLKTNGQVRMTQLYDLLEAYFGHETQNSTDDNIIAKHKKVTLSAATIYQIDPMINMNQMTPYDFIER

Nucleotide

• Length: 2388 bp

>NTDB_id=222298 A6J61_RS04855 WP_070815398.1 1004142..1006529(+) (recD2) [Staphylococcus lugdunensis strain FDAARGOS_222]
ATGGATAACCCTACACTTTTTGAACCGACGATGTTAAAGGGCACCGTCGAAGTTATTTTGTTCCAAAATCAAGATAATTT
CTATACTGTACTTAAAGTTGATACCATTGAATCTAACGAATCGTTCGATACGATGCCAACGGTTGTAGGGTTTTTCCCAA
ATATTGTTGAAGGCGACGTATACACCTTTAAAGGACAGGTTGTTGCGCATCCAAAATATGGCAAACAACTAAAAGCTGAT
ACATTTGAAAAAGAATTACCACAAACGAAAGATGCTATTATTACCTACTTATCAAGTGATTTATTTAAAGGTATTGGTAA
AAAGACAGCACAAAATATTGTTAATACTTTGGGAGAAAATGCAATAAATGATATTTTAGCTCATCCAGACATATTAACAA
AAGTTTCAAATCTTTCTAAAAAGAAACAAGAGCAAATTGCACAACAAATAGCAGCCAATCAAGAATCAGAAAAAATCATG
ATACACTTACATGATTTAGGATTTGGCCCTAAACTATCAATGGCAATCTATCAGTTTTATCAAAGTGAAACAATAAACGT
CGTTGATAATAACCCGTATAAACTTGTATATGATATTAAAGGAATTGGATTTAATAAAGCTGATACATTAGCACGTAATA
TCGGCATCGACTTTAATGACCCAGAACGATTAAAAGCTGGCATATTATTCACACTAGAGGAAGAATGTATTAAACAAGGG
CATACTTATTTACCTACTGAAACAATTCTTAAATCAGCACAAACAATGTTAAGTACGCAAGGGGATGAAATAATTGAAAT
ACATCAACTTGAAGAAATGTTGCAAATTTTAATGGAAGAAGATAAGTTGATTCTTGATCAACAAAAAATTGCCATCCCAA
GTCTTTACTACTCAGAATTAAAAAGCGTACAAAACTTATATCGTATATTAACTCATACCCATAAATTAAATGAACTTGAG
CAATCTGATTTACAGTTGCATATTGGAGAGATAGAAGATAGCAATGAAGTACATTATGCTGCATCACAAAAAGAAGCTTT
ACAAACAGCTATAAACTCAAAAATCATGTTATTGACTGGCGGACCTGGAACTGGTAAGACAACTGTCATTAAAGGTATTA
TAGAGTTATACGCTGAAATTCATGGACTTTCTTTAAATTATGCGGATTACACTGATGATGATTTCCCAGTAGTATTAGCA
GCTCCTACAGGCAGAGCATCGAAACGTTTACAAGAAGCTACTGGCTTAGAGGCAATGACCATCCACCGACTTATAGGATG
GAATCAAGATACACAACCAGAAGACATTTTAGATAATGAAATTAAAGCAAAATTAATTATCATAGATGAAATGTCTATGG
TTGACACTTGGTTATTTCATCAGTTTTTAAATGCGGTACCTTTAGATGCCCAAATTGTATTTGTTGGAGATGAAGACCAA
CTGCCTTCTGTTGGGCCTGGACAAGTATTTAAGGACTTAATCCAGTCTAAAAAAATACCACGTGTCAATTTAACTGAAGT
CTACCGACAACAAGATGGTTCAAGTATTATTGAATTAGCTCACCACATGAAACAAAACGAATCCATAGATATTACAAAAC
GTTATCATGATAGAAGCTTCATTAATTGTAGTGCAGAACAAATTCCTGACGTTGTTAAGAAAGTAGTATCCAGTGCAGTT
AGTAAAGGATATGACATGAGTGATATTCAAGTACTTGCTCCCATGTATAAAGGAAGTGCAGGTATTAAACGTTTAAATCA
AATTCTGCAAACAATTTTAAATCCTAAAGAACCAGACGCCCGTGAAATTGAATTTGGTGATGCTGCATTCCGCAAAGGCG
ATAAAGTATTACAGTTAGTAAATCGTCCTAATGACAATATTTTTAATGGAGATATTGGTATTATTGTTGGCATTTTTTGG
GCAAAAGAAAATGCTTTAAATAAAGATGTTATTATCGTCGATTTTGACGGTAATGAAATTACATTTACACGACAAGACTT
AATTGAATTAACGCATGCATATTGCACTTCGATTCATAAGTCCCAAGGTTCAGAATTCCCAATCGTTATTATGCCCGTAG
TGAAACAATATTTTAGAATGTTACAAAAACCTATTCTTTATACTGGTTTGACTAGAGCTAAACAATCTTTAGTATTACTA
GGGGATCCACAAGCCTTTGACATTGGCCTTAAAACAAATGGTCAAGTTAGAATGACGCAATTATATGATTTATTAGAAGC
ATATTTTGGACACGAAACGCAGAATTCTACTGATGATAATATCATAGCTAAACATAAAAAAGTTACATTATCAGCAGCGA
CAATTTATCAAATAGATCCGATGATCAACATGAATCAAATGACGCCATATGACTTTATTGAACGTTGA

Domains

Predicted by InterproScan.

• UvrD-like helicase C-terminal domain (UvrD_C_2) (672-720)

• Helix-hairpin-helix containing domain (HHH_RecD2) (153-243)

• AAA domain (AAA_30) (339-544)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (585-655)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	49.937	100	0.502