Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   C2H94_RS16495 Genome accession   NZ_CP026034
Coordinates   3145696..3146613 (+) Length   305 a.a.
NCBI ID   WP_038828814.1    Uniprot ID   -
Organism   Bacillus subtilis strain PK5_52     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 3140696..3151613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H94_RS16480 (C2H94_16415) trpS 3141277..3142269 (-) 993 WP_038828823.1 tryptophan--tRNA ligase -
  C2H94_RS16485 (C2H94_16420) oppA 3143013..3144650 (+) 1638 WP_021479550.1 oligopeptide ABC transporter substrate-binding protein OppA -
  C2H94_RS16490 (C2H94_16425) oppB 3144757..3145692 (+) 936 WP_014479444.1 oligopeptide ABC transporter permease OppB -
  C2H94_RS16495 (C2H94_16430) amiD 3145696..3146613 (+) 918 WP_038828814.1 oligopeptide ABC transporter permease OppC Regulator
  C2H94_RS16500 (C2H94_16435) oppD 3146618..3147694 (+) 1077 WP_015252358.1 oligopeptide ABC transporter ATP-binding protein OppD -
  C2H94_RS16505 (C2H94_16440) oppF 3147696..3148613 (+) 918 WP_003239287.1 oligopeptide ABC transporter ATP-binding protein OppF -
  C2H94_RS16510 (C2H94_16445) yjbB 3148720..3149937 (+) 1218 WP_072175656.1 MFS transporter -
  C2H94_RS16515 (C2H94_16450) yjbC 3150101..3150679 (+) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  C2H94_RS16520 (C2H94_16455) spx 3150860..3151255 (+) 396 WP_014476435.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33607.10 Da        Isoelectric Point: 10.2873

>NTDB_id=222252 C2H94_RS16495 WP_038828814.1 3145696..3146613(+) (amiD) [Bacillus subtilis strain PK5_52]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIVLMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=222252 C2H94_RS16495 WP_038828814.1 3145696..3146613(+) (amiD) [Bacillus subtilis strain PK5_52]
ATGCAGAACATTCCGAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCGTGCTCATTG
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCGCCT
TCAAAAGATCACTGGTTCGGCACAGATGATCTTGGACGGGACATTTTCGTCCGTACATGGGTAGGAGCGCGAATCTCAAT
CTTTATCGGTGTCGCAGCCGCTGTTCTTGATTTGCTGATCGGTGTCATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGCA
GAACGGATGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACAGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAGTATGTGCTTGCATCACAGACACTGGGTGCAAAAACATCCCGTCTTCTGTTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCAATTTTCACAGAAGCC
TTTTTAAGCTATTTGGGACTTGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGTTTCAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.599

100

0.361
  amiD Streptococcus thermophilus LMD-9

35.599

100

0.361