Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   C2H91_RS04055 Genome accession   NZ_CP026030
Coordinates   867626..868543 (-) Length   305 a.a.
NCBI ID   WP_003232954.1    Uniprot ID   A0A9W5LHY5
Organism   Bacillus subtilis strain PK3_9     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 862626..873543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H91_RS04030 (C2H91_04010) spx 862984..863379 (-) 396 WP_014476435.1 transcriptional regulator Spx -
  C2H91_RS04035 (C2H91_04015) yjbC 863560..864138 (-) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  C2H91_RS04040 (C2H91_04020) yjbB 864302..865519 (-) 1218 WP_072175656.1 MFS transporter -
  C2H91_RS04045 (C2H91_04025) oppF 865626..866543 (-) 918 WP_003239287.1 oligopeptide ABC transporter ATP-binding protein OppF -
  C2H91_RS04050 (C2H91_04030) oppD 866545..867621 (-) 1077 WP_014906294.1 oligopeptide ABC transporter ATP-binding protein OppD -
  C2H91_RS04055 (C2H91_04035) amiD 867626..868543 (-) 918 WP_003232954.1 oligopeptide ABC transporter permease OppC Regulator
  C2H91_RS04060 (C2H91_04040) oppB 868547..869482 (-) 936 WP_003245554.1 oligopeptide ABC transporter permease OppB -
  C2H91_RS04065 (C2H91_04045) oppA 869589..871226 (-) 1638 WP_021479550.1 oligopeptide ABC transporter substrate-binding protein OppA -
  C2H91_RS04070 (C2H91_04050) trpS 871971..872963 (+) 993 WP_003245134.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33621.12 Da        Isoelectric Point: 10.2873

>NTDB_id=222018 C2H91_RS04055 WP_003232954.1 867626..868543(-) (amiD) [Bacillus subtilis strain PK3_9]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=222018 C2H91_RS04055 WP_003232954.1 867626..868543(-) (amiD) [Bacillus subtilis strain PK3_9]
ATGCAGAACATTCCAAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCGTACTTATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCGCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGACGGGACATTTTCGTCCGTACATGGGTAGGGGCGCGAATCTCAAT
CTTTATCGGTGTTGCAGCCGCTGTTCTTGATTTGCTGATCGGTGTCATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGCA
GAACGGATGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACAGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAGTATGTGCTTGCATCACAGACACTGGGTGCAAAAACATCCCGTCTTCTGTTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCAATTTTCACAGAAGCC
TTTTTAAGCTATTTGGGACTTGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGTTTCAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9W5LHY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.922

100

0.364
  amiD Streptococcus thermophilus LMD-9

35.922

100

0.364

Multiple sequence alignment