Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   CDIF102978_RS12485 Genome accession   NZ_CP020380
Coordinates   2528676..2530508 (-) Length   610 a.a.
NCBI ID   WP_032547538.1    Uniprot ID   -
Organism   Clostridioides difficile strain DSM 102978     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2523676..2535508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDIF102978_RS12465 (CDIF102978_02510) - 2523699..2525063 (-) 1365 WP_021375799.1 aldehyde dehydrogenase -
  CDIF102978_RS21015 - 2525376..2525543 (-) 168 WP_021362690.1 hypothetical protein -
  CDIF102978_RS21020 - 2525641..2525898 (-) 258 WP_021375700.1 flavodoxin domain protein -
  CDIF102978_RS12475 (CDIF102978_02513) - 2525947..2526444 (-) 498 WP_021375749.1 MarR family winged helix-turn-helix transcriptional regulator -
  CDIF102978_RS12480 (CDIF102978_02514) hflX 2526685..2527956 (-) 1272 WP_161946962.1 GTPase HflX -
  CDIF102978_RS12485 (CDIF102978_02515) rcrQ 2528676..2530508 (-) 1833 WP_032547538.1 ABC transporter ATP-binding protein Regulator
  CDIF102978_RS12490 (CDIF102978_02516) - 2530501..2532747 (-) 2247 WP_065977546.1 ABC transporter ATP-binding protein -
  CDIF102978_RS12495 (CDIF102978_02517) - 2532815..2533276 (-) 462 WP_003433857.1 MarR family winged helix-turn-helix transcriptional regulator -
  CDIF102978_RS12505 (CDIF102978_02518) - 2533581..2534147 (-) 567 WP_003423380.1 beta-class carbonic anhydrase -
  CDIF102978_RS12510 (CDIF102978_02519) - 2534834..2535172 (+) 339 WP_003423377.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 610 a.a.        Molecular weight: 68173.02 Da        Isoelectric Point: 6.0577

>NTDB_id=221984 CDIF102978_RS12485 WP_032547538.1 2528676..2530508(-) (rcrQ) [Clostridioides difficile strain DSM 102978]
MSRMERGPMGKSMGAGQKANDFKGTMRKLIAYLSKFKISIILVIVFAIGSASFSIVGPKILGKATTKIFEGLVSKVSGGN
VGIDFNAIGKILTFLLCLYLISALFSFIQGFIMSGISQKVSYNLRKEISVKLDRLPMKYFDTKTHGEILSRITNDIDTLN
QSLNQSMTQLITSVTTMIGVLIMMLSISGIMTLVAVLILPISMFVISRIIKKSQKYFRYQQEYLGNVNGQVEETYSGQTI
VKAFNREDEVIEEFDKLNDRLYNSAWKSQFLSGIMQPLMMFIGNLGYVMVSILGGWLAIKKTIEVGDIQSFIQYVRNFTQ
PMTQIAQVANLLQSTAAASERVFEFLEEEEEDQIVENAVSIDGLEGKIDFENVNFGYNPNKTIINDFSVNVKPGQKVAIV
GPTGAGKTTIVKLLMRFYDVNSGSILIDGHNIKDFNRSELREMFGMVLQDTWLFSGSIMENIRYGKLNATDEEVIEAAKS
AHVHRFIKTLPDGYKMKLNEEASNVSQGQKQLLTIARAILADPKILILDEATSSVDTRTEVLIQKAMDNLMEGRTSFVIA
HRLSTIRDADMILVMNEGDIVEQGNHEELLKKGGFYANLYNSQFEEDEAM

Nucleotide


Download         Length: 1833 bp        

>NTDB_id=221984 CDIF102978_RS12485 WP_032547538.1 2528676..2530508(-) (rcrQ) [Clostridioides difficile strain DSM 102978]
ATGAGTAGAATGGAAAGAGGTCCTATGGGAAAATCTATGGGAGCAGGACAAAAAGCAAATGACTTTAAAGGGACTATGCG
AAAACTAATTGCATATTTATCTAAATTTAAAATATCAATAATTCTAGTAATTGTATTTGCTATTGGTAGTGCATCATTTT
CTATAGTAGGTCCAAAAATTTTAGGAAAGGCAACTACAAAGATATTTGAAGGGCTAGTGAGTAAAGTTTCTGGAGGAAAC
GTAGGTATAGATTTTAATGCAATTGGAAAAATCTTAACCTTTTTACTTTGCCTTTATTTGATAAGTGCACTGTTCTCTTT
TATACAGGGATTTATAATGAGTGGAATTTCTCAAAAAGTATCCTATAATTTAAGAAAAGAGATTTCAGTAAAATTGGATA
GATTACCAATGAAGTATTTTGATACTAAAACGCATGGTGAAATATTATCGAGAATTACGAATGATATAGATACTTTAAAT
CAAAGTTTAAATCAAAGTATGACACAGCTTATAACATCAGTAACAACTATGATAGGTGTTTTGATAATGATGTTATCTAT
AAGTGGAATTATGACATTAGTGGCAGTTTTAATATTACCAATATCAATGTTTGTAATTTCAAGAATAATAAAGAAATCAC
AAAAATACTTTAGATATCAACAAGAATATTTAGGAAATGTAAATGGTCAAGTTGAAGAAACTTATAGTGGTCAAACAATA
GTGAAAGCATTTAATCGTGAAGATGAGGTAATTGAAGAGTTTGATAAATTAAATGATAGGCTGTATAATTCAGCATGGAA
GTCTCAATTTTTATCAGGCATAATGCAACCACTTATGATGTTTATTGGAAACTTGGGATATGTAATGGTATCAATCTTAG
GAGGTTGGCTTGCAATTAAGAAAACAATTGAGGTTGGTGACATACAGTCATTTATACAATATGTAAGAAACTTTACACAG
CCAATGACTCAGATTGCACAGGTTGCCAATTTATTGCAATCAACAGCAGCAGCTTCTGAAAGAGTATTTGAGTTTTTAGA
AGAGGAAGAAGAAGACCAAATTGTTGAAAATGCAGTTTCAATAGATGGTTTAGAAGGTAAAATTGATTTTGAAAATGTCA
ACTTTGGATATAACCCAAACAAAACTATAATAAATGATTTCTCAGTAAATGTTAAACCTGGTCAAAAAGTTGCTATTGTT
GGACCTACAGGAGCAGGTAAAACTACAATAGTTAAACTTTTAATGAGATTTTATGATGTTAATAGCGGTTCAATACTGAT
TGATGGTCATAATATTAAAGATTTTAATCGTAGTGAGCTTAGAGAAATGTTTGGTATGGTTCTTCAAGATACATGGTTAT
TTAGTGGTTCAATTATGGAAAATATAAGATATGGTAAGTTGAATGCTACAGATGAAGAAGTCATAGAGGCTGCTAAATCT
GCACATGTTCATAGATTTATTAAGACATTACCAGATGGATATAAGATGAAATTAAATGAAGAAGCAAGTAATGTTTCTCA
AGGTCAAAAACAATTATTGACTATAGCTCGTGCTATTTTAGCCGATCCTAAAATTTTAATATTAGATGAAGCTACAAGTT
CTGTTGATACTAGAACAGAAGTATTGATTCAAAAAGCTATGGATAATCTTATGGAAGGTAGAACAAGTTTTGTTATAGCC
CACAGATTATCAACTATACGTGATGCTGATATGATTCTTGTAATGAATGAAGGAGATATAGTTGAACAAGGAAATCATGA
GGAACTTCTAAAGAAAGGCGGATTCTATGCTAATCTTTACAATTCTCAATTTGAAGAAGATGAAGCAATGTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(40-322)

ABC transporter (ABC_tran)

(385-533)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.607

96.885

0.5

Multiple sequence alignment