Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   BSK2_RS08670 Genome accession   NZ_CP020367
Coordinates   1667533..1668312 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain GQJK2     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1662533..1673312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSK2_RS08650 (BSK2_08650) trmFO 1663226..1664533 (+) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  BSK2_RS08655 (BSK2_08655) xerC 1664601..1665515 (+) 915 WP_080529318.1 tyrosine recombinase XerC -
  BSK2_RS08660 (BSK2_08660) clpQ 1665528..1666073 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  BSK2_RS08665 (BSK2_08665) hslU 1666090..1667493 (+) 1404 WP_003245556.1 HslU--HslV peptidase ATPase subunit -
  BSK2_RS08670 (BSK2_08670) codY 1667533..1668312 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  BSK2_RS08675 (BSK2_08675) flgB 1668692..1669081 (+) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  BSK2_RS08680 (BSK2_08680) flgC 1669081..1669533 (+) 453 WP_003245521.1 flagellar basal body rod protein FlgC -
  BSK2_RS08685 (BSK2_08685) fliE 1669544..1669864 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  BSK2_RS08690 (BSK2_08690) fliF 1669910..1671520 (+) 1611 WP_010886506.1 flagellar basal-body MS-ring/collar protein FliF -
  BSK2_RS08695 (BSK2_08695) fliG 1671533..1672549 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  BSK2_RS08700 (BSK2_08700) fliH 1672542..1673294 (+) 753 WP_003244804.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=221751 BSK2_RS08670 WP_003220850.1 1667533..1668312(+) (codY) [Bacillus subtilis strain GQJK2]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=221751 BSK2_RS08670 WP_003220850.1 1667533..1668312(+) (codY) [Bacillus subtilis strain GQJK2]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATACTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment