Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   BS11774_RS22185 Genome accession   NZ_CP026010
Coordinates   1684607..1684885 (-) Length   92 a.a.
NCBI ID   WP_026113660.1    Uniprot ID   -
Organism   Bacillus subtilis strain ATCC 11774     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1679607..1689885
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS11774_RS08880 (BS11774_08835) ydfD 1679877..1681325 (+) 1449 WP_128473650.1 PLP-dependent aminotransferase family protein -
  BS11774_RS08885 (BS11774_08840) ydfE 1681443..1682066 (-) 624 WP_128473651.1 flavin reductase family protein -
  BS11774_RS08890 (BS11774_08845) ydfF 1682155..1682835 (+) 681 WP_014478969.1 winged helix-turn-helix domain-containing protein -
  BS11774_RS08895 (BS11774_08850) ydfG 1682916..1683359 (-) 444 WP_014475936.1 carboxymuconolactone decarboxylase family protein -
  BS11774_RS08900 (BS11774_08855) - 1683445..1683624 (-) 180 WP_017695972.1 hypothetical protein -
  BS11774_RS08905 (BS11774_08860) - 1683621..1683770 (-) 150 WP_017695973.1 hypothetical protein -
  BS11774_RS22180 - 1684145..1684468 (-) 324 WP_250634907.1 hypothetical protein -
  BS11774_RS22185 rapF 1684607..1684885 (-) 279 WP_026113660.1 hypothetical protein Regulator
  BS11774_RS08915 (BS11774_08870) - 1685327..1686052 (+) 726 WP_017695978.1 hypothetical protein -
  BS11774_RS08920 (BS11774_08875) - 1686318..1687563 (-) 1246 Protein_1695 IS1182 family transposase -
  BS11774_RS08925 (BS11774_08880) mneP 1687690..1688583 (-) 894 WP_128473652.1 manganese transporter MneP -
  BS11774_RS08930 (BS11774_08885) ydfN 1689057..1689676 (+) 620 Protein_1697 nitroreductase family protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 11264.99 Da        Isoelectric Point: 4.8550

>NTDB_id=221741 BS11774_RS22185 WP_026113660.1 1684607..1684885(-) (rapF) [Bacillus subtilis strain ATCC 11774]
MRDEVKEEIELMKENQDAVVYYQLLKFRHELMLDYLHPDNVRDIEKQYEKLRELKNNNQNLTGMLEYYFYFFMGCTISGS
MNWLLIKLLQTS

Nucleotide


Download         Length: 279 bp        

>NTDB_id=221741 BS11774_RS22185 WP_026113660.1 1684607..1684885(-) (rapF) [Bacillus subtilis strain ATCC 11774]
ATGAGGGATGAAGTTAAGGAAGAAATCGAGCTAATGAAGGAAAACCAAGACGCCGTCGTTTACTACCAACTATTAAAATT
CCGTCATGAATTAATGTTGGACTATCTCCATCCTGACAATGTCAGAGATATAGAGAAACAGTATGAAAAGCTAAGAGAAC
TGAAAAATAACAATCAGAACCTCACAGGAATGTTAGAATACTATTTTTATTTTTTTATGGGATGTACTATTTCAGGCAGC
ATGAACTGGCTTCTAATTAAACTGTTACAGACAAGCTGA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(1-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

46.753

83.696

0.391