Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   BS11774_RS12195 Genome accession   NZ_CP026010
Coordinates   2325124..2326041 (+) Length   305 a.a.
NCBI ID   WP_003232954.1    Uniprot ID   A0A9W5LHY5
Organism   Bacillus subtilis strain ATCC 11774     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2320124..2331041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS11774_RS12180 (BS11774_12130) trpS 2320706..2321698 (-) 993 WP_015483084.1 tryptophan--tRNA ligase -
  BS11774_RS12185 (BS11774_12135) oppA 2322442..2324078 (+) 1637 Protein_2321 oligopeptide ABC transporter substrate-binding protein OppA -
  BS11774_RS12190 (BS11774_12140) oppB 2324185..2325120 (+) 936 WP_128473811.1 oligopeptide ABC transporter permease OppB -
  BS11774_RS12195 (BS11774_12145) amiD 2325124..2326041 (+) 918 WP_003232954.1 oligopeptide ABC transporter permease OppC Regulator
  BS11774_RS12200 (BS11774_12150) oppD 2326046..2327122 (+) 1077 WP_128473812.1 oligopeptide ABC transporter ATP-binding protein OppD -
  BS11774_RS12205 (BS11774_12155) oppF 2327124..2328041 (+) 918 WP_003245567.1 oligopeptide ABC transporter ATP-binding protein OppF -
  BS11774_RS12210 (BS11774_12160) yjbB 2328147..2329364 (+) 1218 WP_128473813.1 MFS transporter -
  BS11774_RS12215 (BS11774_12165) yjbC 2329529..2330107 (+) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  BS11774_RS12220 (BS11774_12170) spx 2330288..2330683 (+) 396 WP_014476435.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33621.12 Da        Isoelectric Point: 10.2873

>NTDB_id=221669 BS11774_RS12195 WP_003232954.1 2325124..2326041(+) (amiD) [Bacillus subtilis strain ATCC 11774]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=221669 BS11774_RS12195 WP_003232954.1 2325124..2326041(+) (amiD) [Bacillus subtilis strain ATCC 11774]
ATGCAGAACATTCCAAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCGTACTTATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCGCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGACGGGACATTTTCGTCCGTACATGGGTAGGGGCGCGAATCTCAAT
CTTTATCGGTGTTGCAGCCGCTGTTCTTGATTTGCTGATCGGCGTCATTTGGGGGAGCATTTCAGGCTTCCGCGGTGGCA
GAACGGACGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACAGGCTGGATTAATATGGCCAGAATCGTACGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAGTATGTGCTTGCTTCACAGACACTGGGTGCAAAAACATCCCGTCTTCTGTTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCGATTTTCACAGAAGCC
TTTTTAAGCTATTTGGGACTTGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGTTTTAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9W5LHY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.922

100

0.364
  amiD Streptococcus thermophilus LMD-9

35.922

100

0.364