Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   BLMD_RS09110 Genome accession   NZ_CP020352
Coordinates   1803764..1804543 (+) Length   259 a.a.
NCBI ID   WP_003181756.1    Uniprot ID   A0A1Y0YKK2
Organism   Bacillus paralicheniformis strain MDJK30     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1798764..1809543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BLMD_RS09090 (BLMD_09090) trmFO 1799461..1800765 (+) 1305 WP_020451382.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  BLMD_RS09095 (BLMD_09095) xerC 1800832..1801746 (+) 915 WP_020451383.1 tyrosine recombinase XerC -
  BLMD_RS09100 (BLMD_09100) hslV 1801760..1802305 (+) 546 WP_080131369.1 ATP-dependent protease subunit HslV -
  BLMD_RS09105 (BLMD_09105) hslU 1802322..1803725 (+) 1404 WP_020451385.1 HslU--HslV peptidase ATPase subunit -
  BLMD_RS09110 (BLMD_09110) codY 1803764..1804543 (+) 780 WP_003181756.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  BLMD_RS09115 (BLMD_09115) flgB 1804895..1805284 (+) 390 WP_080131370.1 flagellar basal body rod protein FlgB -
  BLMD_RS09120 (BLMD_09120) flgC 1805284..1805736 (+) 453 WP_025811385.1 flagellar basal body rod protein FlgC -
  BLMD_RS09125 (BLMD_09125) fliE 1805750..1806067 (+) 318 WP_020451389.1 flagellar hook-basal body complex protein FliE -
  BLMD_RS09130 (BLMD_09130) fliF 1806118..1807719 (+) 1602 WP_020451390.1 flagellar basal-body MS-ring/collar protein FliF -
  BLMD_RS09135 (BLMD_09135) fliG 1807733..1808749 (+) 1017 WP_020451391.1 flagellar motor switch protein FliG -
  BLMD_RS09140 (BLMD_09140) fliH 1808733..1809500 (+) 768 WP_080131371.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29073.42 Da        Isoelectric Point: 4.8196

>NTDB_id=221633 BLMD_RS09110 WP_003181756.1 1803764..1804543(+) (codY) [Bacillus paralicheniformis strain MDJK30]
MALLQKTRKINAMLQNAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGFSINQQIENDRMKKMLEERQFPEDYTKSLF
NIPETSSNLDINSEYTAFPVENRDLFQAGLTTVVPIIGGGERLGTLILSRLQEKFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLMELEKLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=221633 BLMD_RS09110 WP_003181756.1 1803764..1804543(+) (codY) [Bacillus paralicheniformis strain MDJK30]
ATGGCTTTATTACAAAAAACAAGAAAGATTAATGCAATGCTGCAAAATGCGGCAGGGAAGCCGGTTAATTTTAAAGAAAT
GGCCGAAACGCTTCGCGATGTGATTGATTCGAACATTTTCGTTGTCAGCCGCAGAGGAAAGCTTCTCGGTTTCTCGATCA
ACCAGCAGATCGAAAATGACCGGATGAAAAAAATGCTTGAAGAGCGCCAGTTTCCTGAAGACTATACAAAAAGTCTGTTC
AACATTCCGGAAACTTCATCCAACCTTGACATTAACAGCGAATATACAGCTTTCCCTGTGGAAAACCGCGATTTGTTCCA
AGCGGGTCTGACCACAGTCGTTCCGATCATCGGAGGAGGCGAAAGACTCGGCACCTTGATTCTGTCCCGCCTTCAGGAGA
AATTCGAGGATGACGATCTGATCCTAGCCGAATATGGCGCAACGGTCGTAGGAATGGAAATTCTCAGAGAGAAAGCTGAA
GAGATCGAAGAGGAAGCGCGCAGCAAAGCGGTCGTTCAAATGGCGATCAGTTCGTTATCTTACAGCGAGCTTGAAGCAAT
TGAACATATTTTTGAAGAGCTTGACGGAAATGAAGGTCTGCTTGTCGCAAGTAAAATTGCAGACCGCGTCGGCATCACTC
GCTCGGTCATTGTCAATGCGCTGCGCAAACTTGAAAGCGCCGGTGTCATTGAATCAAGGTCATTAGGAATGAAAGGCACA
TACATTAAAGTCCTGAACAACAAATTTTTAATGGAATTAGAAAAACTAAAGTCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0YKK2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

94.595

100

0.946
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment