Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   BLMD_RS09080 Genome accession   NZ_CP020352
Coordinates   1796203..1797105 (+) Length   300 a.a.
NCBI ID   WP_057957852.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain MDJK30     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1791203..1802105
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BLMD_RS09060 (BLMD_09060) - 1791855..1793552 (+) 1698 WP_080131368.1 hypothetical protein -
  BLMD_RS09065 (BLMD_09065) - 1793549..1793833 (+) 285 WP_025811381.1 FlhB-like flagellar biosynthesis protein -
  BLMD_RS09070 (BLMD_09070) sucC 1794009..1795169 (+) 1161 WP_020451378.1 ADP-forming succinate--CoA ligase subunit beta -
  BLMD_RS09075 (BLMD_09075) sucD 1795188..1796090 (+) 903 WP_020451379.1 succinate--CoA ligase subunit alpha -
  BLMD_RS09080 (BLMD_09080) dprA 1796203..1797105 (+) 903 WP_057957852.1 DNA-processing protein DprA Machinery gene
  BLMD_RS09085 (BLMD_09085) topA 1797310..1799385 (+) 2076 WP_020451381.1 type I DNA topoisomerase -
  BLMD_RS09090 (BLMD_09090) trmFO 1799461..1800765 (+) 1305 WP_020451382.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  BLMD_RS09095 (BLMD_09095) xerC 1800832..1801746 (+) 915 WP_020451383.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 33152.52 Da        Isoelectric Point: 10.0703

>NTDB_id=221632 BLMD_RS09080 WP_057957852.1 1796203..1797105(+) (dprA) [Bacillus paralicheniformis strain MDJK30]
MNDSSELLILLRLRGTLSPSLLTKWWKQDPSLSLTGEKNHLLTKLSLKRSDLCSIRKLAEQELSNVKRLIRSYEAAGVRM
AAICSPDYPASLKTIHDPPPVLFLKGDVKLLNEQRLIGIVGTRSPSLYGKRAAVHLVRELCKKSWTIVSGLAKGIDGLAH
QESICSKGRTIGVIAGGFNSIYPREHRQLAGQMAENHLLVSEHPPHVKPQKWHFPMRNRLISGLTEGIVVVQGKEKSGSL
ITAYQALEQGREVFAVPGPIFDANSFGPSRLIQEGAKLVLNIEDILSELPPSRTQYPEPV

Nucleotide


Download         Length: 903 bp        

>NTDB_id=221632 BLMD_RS09080 WP_057957852.1 1796203..1797105(+) (dprA) [Bacillus paralicheniformis strain MDJK30]
ATGAACGACAGCAGCGAGCTTTTGATATTGCTCCGCCTTCGCGGCACACTCTCCCCTTCTCTGCTGACCAAGTGGTGGAA
GCAGGATCCTTCCTTGTCTCTTACGGGCGAAAAAAACCATCTTTTAACGAAGCTTTCATTAAAAAGATCAGACTTGTGCT
CCATACGAAAACTGGCGGAACAAGAACTGTCTAATGTTAAACGGCTCATCCGTTCTTACGAAGCGGCTGGAGTCCGCATG
GCCGCCATATGTTCCCCCGATTATCCAGCCAGCTTGAAAACCATTCATGACCCGCCTCCCGTCCTTTTTTTAAAAGGAGA
TGTTAAACTTCTCAATGAACAAAGACTGATCGGAATCGTCGGAACCCGCAGCCCGTCATTATACGGAAAAAGAGCAGCGG
TTCACCTTGTCAGGGAGCTTTGCAAAAAAAGCTGGACGATCGTCAGCGGCCTTGCAAAAGGAATTGACGGTCTTGCACAT
CAGGAGAGCATCTGTTCAAAGGGAAGGACAATCGGCGTCATCGCGGGCGGATTCAATAGCATTTATCCCCGTGAACACCG
CCAGCTCGCCGGTCAAATGGCCGAAAACCACCTGCTGGTATCAGAGCACCCTCCCCACGTTAAACCTCAAAAATGGCACT
TTCCGATGCGAAATCGGCTGATCAGCGGATTAACGGAAGGAATCGTTGTCGTCCAGGGAAAGGAAAAGAGCGGGTCGCTC
ATCACAGCATATCAAGCCCTTGAGCAGGGGCGGGAGGTGTTCGCCGTGCCTGGTCCGATCTTTGACGCCAACTCTTTCGG
TCCTTCAAGGCTGATCCAGGAAGGGGCGAAACTCGTATTGAATATTGAAGATATTTTGAGCGAACTGCCGCCTTCACGCA
CTCAATATCCGGAACCTGTTTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

57.525

99.667

0.573

Multiple sequence alignment