Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   SAS_RS06310 Genome accession   NC_002953
Coordinates   1272710..1273483 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus subsp. aureus MSSA476     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1267710..1278483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAS_RS06290 (SAS1185) trmFO 1268054..1269361 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  SAS_RS06295 (SAS1186) xerC 1269778..1270674 (+) 897 WP_001015602.1 tyrosine recombinase XerC -
  SAS_RS06300 (SAS1187) hslV 1270671..1271216 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  SAS_RS06305 (SAS1188) hslU 1271282..1272685 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  SAS_RS06310 (SAS1189) codY 1272710..1273483 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  SAS_RS06315 - 1273534..1273626 (+) 93 WP_031788481.1 hypothetical protein -
  SAS_RS06320 (SAS1190) rpsB 1273825..1274592 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  SAS_RS06325 - 1274626..1274739 (+) 114 WP_001789890.1 hypothetical protein -
  SAS_RS06330 (SAS1191) tsf 1274774..1275655 (+) 882 WP_000201387.1 translation elongation factor Ts -
  SAS_RS06335 (SAS1192) pyrH 1275792..1276514 (+) 723 WP_000057330.1 UMP kinase -
  SAS_RS06340 (SAS1193) frr 1276533..1277087 (+) 555 WP_001280006.1 ribosome recycling factor -
  SAS_RS06345 (SAS1194) - 1277460..1278230 (+) 771 WP_000473705.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=22137 SAS_RS06310 WP_000055337.1 1272710..1273483(+) (codY) [Staphylococcus aureus subsp. aureus MSSA476]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=22137 SAS_RS06310 WP_000055337.1 1272710..1273483(+) (codY) [Staphylococcus aureus subsp. aureus MSSA476]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGGTCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATCCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTTCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428

Multiple sequence alignment