Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   B4U62_RS08840 Genome accession   NZ_CP020102
Coordinates   1690150..1690929 (+) Length   259 a.a.
NCBI ID   WP_080028527.1    Uniprot ID   -
Organism   Bacillus subtilis strain NCIB 3610     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1685150..1695929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B4U62_RS08820 (B4U62_08820) trmFO 1685843..1687150 (+) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  B4U62_RS08825 (B4U62_08825) xerC 1687218..1688132 (+) 915 WP_003231988.1 tyrosine recombinase XerC -
  B4U62_RS08830 (B4U62_08830) clpQ 1688145..1688690 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  B4U62_RS08835 (B4U62_08835) hslU 1688707..1690110 (+) 1404 WP_003245556.1 HslU--HslV peptidase ATPase subunit -
  B4U62_RS08840 (B4U62_08840) codY 1690150..1690929 (+) 780 WP_080028527.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  B4U62_RS08845 (B4U62_08845) flgB 1691309..1691698 (+) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  B4U62_RS08850 (B4U62_08850) flgC 1691698..1692150 (+) 453 WP_003245521.1 flagellar basal body rod protein FlgC -
  B4U62_RS08855 (B4U62_08855) fliE 1692161..1692481 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  B4U62_RS08860 (B4U62_08860) fliF 1692527..1694137 (+) 1611 WP_010886506.1 flagellar basal-body MS-ring/collar protein FliF -
  B4U62_RS08865 (B4U62_08865) fliG 1694150..1695166 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  B4U62_RS08870 (B4U62_08870) fliH 1695159..1695911 (+) 753 WP_003244804.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28999.19 Da        Isoelectric Point: 4.6514

>NTDB_id=221162 B4U62_RS08840 WP_080028527.1 1690150..1690929(+) (codY) [Bacillus subtilis strain NCIB 3610]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAVSSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=221162 B4U62_RS08840 WP_080028527.1 1690150..1690929(+) (codY) [Bacillus subtilis strain NCIB 3610]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCAATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTGTCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.614

100

0.996
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment