Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   B5D75_RS06435 Genome accession   NZ_CP020045
Coordinates   1267242..1267757 (-) Length   171 a.a.
NCBI ID   WP_002862019.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain ATCC 35925     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1262242..1272757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B5D75_RS06420 (B5D75_06420) - 1262339..1264171 (-) 1833 WP_079399334.1 motility associated factor glycosyltransferase family protein -
  B5D75_RS06425 (B5D75_06425) - 1264168..1265991 (-) 1824 WP_044306191.1 motility associated factor glycosyltransferase family protein -
  B5D75_RS06430 (B5D75_06430) - 1266001..1267242 (-) 1242 WP_079005329.1 DUF2920 family protein -
  B5D75_RS06435 (B5D75_06435) ctsG 1267242..1267757 (-) 516 WP_002862019.1 type II secretion system protein Machinery gene
  B5D75_RS06440 (B5D75_06440) tsaD 1267758..1268765 (-) 1008 WP_044306192.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  B5D75_RS06445 (B5D75_06445) - 1268762..1270156 (-) 1395 WP_079005330.1 M99 family carboxypeptidase catalytic domain-containing protein -
  B5D75_RS06450 (B5D75_06450) dxr 1270158..1271228 (-) 1071 WP_044306195.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  B5D75_RS06455 (B5D75_06455) cdsA 1271225..1271950 (-) 726 WP_044306196.1 phosphatidate cytidylyltransferase -
  B5D75_RS06460 (B5D75_06460) - 1271959..1272297 (-) 339 WP_002852397.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18662.56 Da        Isoelectric Point: 6.4693

>NTDB_id=220652 B5D75_RS06435 WP_002862019.1 1267242..1267757(-) (ctsG) [Campylobacter jejuni subsp. jejuni strain ATCC 35925]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLGN
FNGIKEVNFRVGDEKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=220652 B5D75_RS06435 WP_002862019.1 1267242..1267757(-) (ctsG) [Campylobacter jejuni subsp. jejuni strain ATCC 35925]
ATGAAAAAAGCTTTTACCATATTAGAACTTGTTTTTGTGATTGTTATTTTAGGAATTTTAGCCGCTATTGCTTTACCAAA
AATGAGTTCAAGCAAGGATGAAGCTGAAGTTAGTAAGTCTTTAAATAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTCGATCTTGGCAAT
TTTAATGGTATAAAAGAAGTAAATTTTCGCGTAGGCGATGAGAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATCAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

92.982

100

0.93

Multiple sequence alignment