Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   Vp2S01_RS16490 Genome accession   NZ_CP020034
Coordinates   3221591..3222316 (+) Length   241 a.a.
NCBI ID   WP_079854046.1    Uniprot ID   A0A9P2QR04
Organism   Vibrio parahaemolyticus strain 20130629002S01     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3216591..3227316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Vp2S01_RS16475 (Vp2S01_2990) - 3217694..3220015 (+) 2322 WP_031856025.1 Tex family protein -
  Vp2S01_RS16480 (Vp2S01_2991) - 3220151..3220615 (-) 465 WP_005459035.1 hypothetical protein -
  Vp2S01_RS16485 (Vp2S01_2992) bioH 3220739..3221506 (-) 768 WP_029786485.1 pimeloyl-ACP methyl ester esterase BioH -
  Vp2S01_RS16490 (Vp2S01_2993) comF 3221591..3222316 (+) 726 WP_079854046.1 phosphoribosyltransferase family protein Machinery gene
  Vp2S01_RS16495 (Vp2S01_2994) nfuA 3222414..3222998 (+) 585 WP_005458964.1 Fe-S biogenesis protein NfuA -
  Vp2S01_RS16500 (Vp2S01_2995) nudE 3223219..3223788 (+) 570 WP_005459019.1 ADP compounds hydrolase NudE -
  Vp2S01_RS16505 (Vp2S01_2996) cysQ 3223829..3224656 (+) 828 WP_005458987.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  Vp2S01_RS16510 (Vp2S01_2997) - 3224941..3225702 (-) 762 WP_005496730.1 type II secretion system protein N -
  Vp2S01_RS16515 (Vp2S01_2998) - 3225704..3226195 (-) 492 WP_005458943.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27640.72 Da        Isoelectric Point: 8.8553

>NTDB_id=220596 Vp2S01_RS16490 WP_079854046.1 3221591..3222316(+) (comF) [Vibrio parahaemolyticus strain 20130629002S01]
MLSHHWQNIMHRVLSSQCGLCRFPIQAAAQPNALRWCDHCYQYLTPVKRCQRCGLSLKAEEANIESICGECLSEPPPWQR
LFTLGDYDFPLSREVQRFKDHGQTWHVHALTQLLAQSISTPAPLITTVPLHWQRYLYRGFNQSDILARHLAGHLNVRFDN
HVFRRVKHAQSQRRNKKSSREQNLKGAFTLNQPPKYNHVAIVDDVVTTGSTVRQLCHLLLEVGVETVDIYCICRTPAPGA
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=220596 Vp2S01_RS16490 WP_079854046.1 3221591..3222316(+) (comF) [Vibrio parahaemolyticus strain 20130629002S01]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTGCTCAGCAGTCAATGCGGTTTATGTCGCTTCCCGATTCAGGC
TGCCGCTCAACCCAATGCGCTGCGTTGGTGTGATCACTGTTATCAATATCTTACGCCAGTAAAACGCTGCCAACGCTGTG
GATTGAGCTTAAAAGCAGAGGAAGCGAATATAGAGAGTATTTGCGGCGAGTGCCTCTCCGAGCCTCCACCGTGGCAACGG
CTATTTACCTTGGGAGACTACGACTTTCCGCTGTCTCGAGAAGTACAACGCTTCAAAGATCACGGACAAACATGGCATGT
TCACGCTTTAACGCAATTGCTTGCCCAGAGCATTTCAACTCCCGCTCCGCTTATCACCACAGTGCCATTGCACTGGCAAC
GCTATTTGTATCGAGGCTTTAATCAGAGCGACATACTGGCGCGACATTTGGCTGGCCACCTTAATGTGAGGTTTGATAAT
CACGTGTTTCGCCGCGTAAAACACGCCCAGTCGCAGCGCAGGAACAAGAAATCCAGCCGAGAACAGAATTTAAAAGGCGC
TTTCACCTTAAATCAGCCACCAAAGTATAACCACGTCGCAATAGTAGATGATGTGGTCACGACGGGAAGCACGGTTCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAACCGTCGATATTTACTGCATCTGCAGAACCCCTGCTCCTGGTGCT
GTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

71.784

100

0.718
  comF Vibrio cholerae strain A1552

47.899

98.755

0.473

Multiple sequence alignment