Detailed information NTG0220536

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: GTHT12_RS13405
• Genome accession: NZ_CP020030
• Coordinates: 2661488..2663851 (-)
• Length: 787 a.a.
• NCBI ID: WP_029760677.1
• Uniprot ID: -
• Organism: Geobacillus thermodenitrificans strain T12
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2656488..2668851

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GTHT12_RS13380 (GTHT12_02059)	alaS	2656499..2659135 (-)	2637	WP_029760678.1	alanine--tRNA ligase	-
GTHT12_RS13385 (GTHT12_02060)	-	2659452..2660513 (-)	1062	WP_008881016.1	AI-2E family transporter	-
GTHT12_RS13390 (GTHT12_02061)	-	2660636..2660770 (-)	135	WP_008881017.1	YrzQ family protein	-
GTHT12_RS13395 (GTHT12_02062)	-	2660782..2660973 (-)	192	WP_008881018.1	hypothetical protein	-
GTHT12_RS13400 (GTHT12_02063)	-	2660989..2661462 (-)	474	WP_008881019.1	PRC-barrel domain-containing protein	-
GTHT12_RS13405 (GTHT12_02064)	recD2	2661488..2663851 (-)	2364	WP_029760677.1	ATP-dependent RecD-like DNA helicase	Machinery gene
GTHT12_RS13410 (GTHT12_02065)	-	2663869..2664531 (-)	663	WP_008881021.1	tetratricopeptide repeat protein	-
GTHT12_RS13415 (GTHT12_02066)	mnmA	2664640..2665755 (-)	1116	WP_008881022.1	tRNA 2-thiouridine(34) synthase MnmA	-
GTHT12_RS13420 (GTHT12_02067)	-	2665769..2666911 (-)	1143	WP_011887880.1	cysteine desulfurase family protein	-
GTHT12_RS13425 (GTHT12_02068)	-	2666934..2667350 (-)	417	WP_008881024.1	Rrf2 family transcriptional regulator	-
GTHT12_RS19660	-	2667350..2667544 (-)	195	WP_253806220.1	hypothetical protein	-
GTHT12_RS13430 (GTHT12_02069)	-	2667574..2668005 (-)	432	WP_230459201.1	YitT family protein	-

Sequence

Protein

• Length: 787 a.a.
• Molecular weight: 86371.74 Da
• Isoelectric Point: 5.0347

>NTDB_id=220536 GTHT12_RS13405 WP_029760677.1 2661488..2663851(-) (recD2) [Geobacillus thermodenitrificans strain T12]
MQEQQSLALDGRTFIKGVCLAVIFHNEETLYTVVRIRVEETNEAAAEEEVVVTGYFPRLNEGDVYIFYGQFRQHPRFGRQ
YAAEQFRKQLPNTKEGVIDYLSSGLFKGIGKKTATAIVDALGENAIAAILRDPGALERVPKLTKQKAKQLYETLCAHEGL
EQTMIALAQLGFGPQLAMKIYQVYGEETMDIIHENPYKLVEDIEGIGFGRADELGRQLGISGSHPARLRAACLFVLEQAC
LQEGHVYMKKEELVSRIGELLGGRSNGAVDGQAIEQTLLMLSEEGKMIAEQGRYYLPSLYFAEKGIASNIRRLLGQTPPS
ASFPESEFLLALGALEERLGMQYAPQQKEAIQRALSSPLFILTGGPGTGKTTVIKGIVELFAVLNGISLSPDDYKNGEPF
PVLLAAPTGRAAKRMSEATGLPAATIHRLLGWNGAEGFSHDEHEPIAGKLLVVDEVSMVDTWLANHLLKAVPNGMQVIFV
GDEDQLPSVGPGQVLKDLLESGVIPSVRLTEVYRQAEGSSIIELAHEMKRGNVPADLTAPKADRSFIRCRAGQVASVVRQ
IAENARNKGFSVKDIQVLAPMYRGPAGIDQLNKVLQELFNPPTDGKRELSVGDVVYRVGDKVLQLVNQPEDNVFNGDIGE
VVAIFYAKENTEKQDLLVVSFDGIEVTYTRQDLAQITHAYCCSVHKAQGSEFPIVILPVVKSYYRMLKRNLLYTAVTRSK
QFLILCGEEEAFRFGVAQRGDGARQTALAEKLAASTALFVEGELPLEDANIGMENVTPYDFMDDGSS

Nucleotide

• Length: 2364 bp

>NTDB_id=220536 GTHT12_RS13405 WP_029760677.1 2661488..2663851(-) (recD2) [Geobacillus thermodenitrificans strain T12]
TTGCAAGAGCAGCAATCGCTTGCGCTGGACGGCCGCACGTTTATTAAAGGGGTGTGTTTGGCCGTCATTTTTCATAACGA
GGAGACGTTGTATACCGTTGTCCGTATCCGCGTCGAAGAAACGAATGAAGCGGCTGCGGAGGAAGAAGTGGTCGTCACCG
GCTATTTTCCACGTTTAAATGAAGGGGACGTGTACATCTTTTACGGGCAATTCCGCCAACATCCGCGCTTTGGCCGCCAG
TATGCGGCCGAGCAGTTCCGCAAACAGCTTCCGAACACGAAAGAAGGAGTCATCGATTATTTGTCGAGCGGCTTGTTTAA
GGGGATCGGCAAAAAAACAGCGACAGCGATTGTCGATGCGCTTGGTGAAAACGCGATCGCCGCCATTTTGCGTGATCCAG
GAGCGCTCGAACGCGTGCCCAAGCTGACGAAACAAAAAGCGAAGCAATTGTACGAAACGCTCTGCGCCCACGAAGGGCTC
GAACAGACGATGATCGCCCTCGCTCAGCTCGGTTTTGGTCCACAGCTGGCAATGAAAATTTACCAAGTATACGGCGAAGA
GACAATGGACATCATTCATGAAAACCCGTACAAGCTCGTCGAAGATATTGAAGGGATCGGTTTTGGTCGCGCCGATGAGC
TCGGGCGGCAGCTCGGCATTTCCGGCAGTCATCCAGCCCGGCTGCGCGCCGCTTGTCTGTTTGTCCTTGAGCAGGCATGC
TTGCAAGAAGGGCACGTCTACATGAAGAAAGAAGAGCTCGTCAGCCGCATTGGGGAGCTGCTTGGCGGAAGGTCGAACGG
AGCGGTTGATGGACAAGCCATCGAACAGACGCTCCTTATGTTAAGCGAAGAAGGAAAGATGATCGCGGAACAAGGCCGCT
ATTATCTTCCTTCGCTTTACTTCGCCGAAAAAGGGATCGCTTCTAACATTCGGCGGTTGCTCGGGCAAACGCCACCATCG
GCCTCATTTCCGGAGTCGGAGTTTTTGCTGGCGCTCGGGGCGCTTGAAGAACGACTCGGGATGCAATATGCTCCGCAGCA
AAAAGAAGCGATTCAACGGGCGCTGTCTTCGCCGCTCTTTATTTTGACGGGAGGTCCAGGAACAGGAAAAACAACGGTCA
TTAAAGGAATTGTTGAGCTGTTTGCGGTTCTAAATGGCATATCACTTTCCCCCGACGATTACAAAAACGGTGAACCGTTT
CCTGTGCTGCTCGCTGCTCCGACTGGACGGGCTGCAAAGCGGATGAGTGAGGCGACCGGGCTGCCGGCGGCGACGATTCA
CCGGCTGCTCGGCTGGAATGGAGCGGAAGGGTTCAGCCACGATGAACATGAGCCGATTGCCGGTAAGCTGCTTGTCGTCG
ATGAGGTGTCGATGGTCGATACGTGGTTGGCTAATCACCTGTTAAAAGCGGTGCCTAATGGGATGCAAGTCATCTTCGTT
GGCGATGAAGACCAGCTTCCATCCGTCGGGCCAGGGCAAGTGTTGAAAGATTTGCTCGAGTCGGGTGTTATCCCGTCCGT
GCGGCTGACCGAGGTGTACCGCCAGGCGGAAGGGTCATCGATTATCGAGCTCGCCCATGAGATGAAGCGTGGGAACGTGC
CGGCCGACTTGACTGCCCCGAAGGCGGATCGTTCGTTCATCCGCTGCCGCGCCGGACAAGTGGCTAGTGTCGTGCGTCAA
ATCGCCGAAAATGCGCGTAACAAAGGGTTTTCCGTCAAAGACATTCAAGTGCTCGCTCCGATGTACCGCGGCCCAGCCGG
TATCGATCAGCTAAACAAAGTGCTGCAGGAGCTGTTTAATCCACCAACGGATGGGAAGCGAGAACTTTCCGTTGGCGACG
TAGTGTATCGCGTCGGCGATAAAGTGCTCCAGCTCGTCAATCAACCGGAAGACAACGTGTTTAACGGCGATATCGGTGAA
GTCGTGGCCATTTTTTATGCCAAAGAAAATACAGAAAAGCAAGATTTGCTCGTCGTCTCATTTGACGGCATTGAAGTGAC
GTATACAAGGCAAGATTTAGCGCAAATTACCCATGCATATTGCTGCTCCGTCCATAAGGCGCAAGGGAGCGAGTTTCCGA
TTGTCATTTTGCCTGTTGTCAAAAGTTATTACCGGATGTTGAAGCGGAATTTGTTGTATACGGCGGTGACAAGAAGCAAA
CAATTTCTGATTTTATGCGGGGAGGAAGAAGCATTCCGGTTTGGTGTTGCCCAGAGGGGCGACGGAGCGCGCCAGACGGC
GCTTGCAGAAAAGTTGGCGGCTTCGACTGCGCTGTTTGTCGAAGGGGAACTGCCGCTTGAGGATGCGAACATCGGGATGG
AAAACGTTACGCCGTATGACTTTATGGACGATGGGTCAAGCTAA

Domains

Predicted by InterproScan.

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (591-661)

• AAA domain (AAA_30) (342-549)

• Helix-hairpin-helix containing domain (HHH_RecD2) (157-247)

• Helix-hairpin-helix domain (HHH_5) (107-153)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (678-726)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	59.925	100	0.606