Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   B4602_RS07875 Genome accession   NZ_CP020020
Coordinates   1572207..1573277 (-) Length   356 a.a.
NCBI ID   WP_000776421.1    Uniprot ID   -
Organism   Staphylococcus aureus strain ATCC 6538     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1567207..1578277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B4602_RS07835 gcvPA 1567384..1568730 (-) 1347 WP_042727693.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  B4602_RS07840 gcvT 1568750..1569841 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  B4602_RS07845 - 1570000..1570524 (-) 525 WP_001015121.1 shikimate kinase -
  B4602_RS07850 - 1570514..1570660 (-) 147 WP_001789879.1 hypothetical protein -
  B4602_RS07855 comGF 1570757..1571254 (-) 498 WP_029694050.1 competence type IV pilus minor pilin ComGF Machinery gene
  B4602_RS07860 comGE 1571172..1571471 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  B4602_RS07865 comGD 1571458..1571904 (-) 447 WP_072433556.1 competence type IV pilus minor pilin ComGD Machinery gene
  B4602_RS07870 comGC 1571882..1572193 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  B4602_RS07875 comGB 1572207..1573277 (-) 1071 WP_000776421.1 competence type IV pilus assembly protein ComGB Machinery gene
  B4602_RS07880 comGA 1573249..1574223 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  B4602_RS07885 - 1574275..1574898 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  B4602_RS07890 - 1574895..1575224 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  B4602_RS07895 - 1575224..1576210 (-) 987 WP_000161314.1 ROK family glucokinase -
  B4602_RS07900 - 1576207..1576410 (-) 204 WP_000087561.1 YqgQ family protein -
  B4602_RS07905 - 1576391..1577854 (-) 1464 WP_001017867.1 rhomboid family intramembrane serine protease -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41429.81 Da        Isoelectric Point: 10.0606

>NTDB_id=220238 B4602_RS07875 WP_000776421.1 1572207..1573277(-) (comGB) [Staphylococcus aureus strain ATCC 6538]
MKLQWINTFKLHSKKRQLSKAQQIDLLSNLCNLLKYGFTLYQSFQFLNLQMTYKNKQLGTTILSEISNGAPCNQILSLIG
YSDTIVMQVYLAERFGNIIDVLEETVNYMKVNRKSEQRLLKTLQYPLILVSIFIAMIIILNLTVIPQFQQLYTSMNIQLS
SFQKTLSFFITSLPTIIVVMLIIVSMLAIIMKLIYNNLNMLNKINFVMKLPLISGYFQLFKTYFVTNELVLFYKNGITLQ
SIVDVYINHSSDPFRQFLGKYLLTYSEMGYGLPQILEKLKCFKPQLIKFVLQGEKRGKLEVELKLYSQILVKQIEDKAIK
QTQFLQPILFLILGLFIVAIYLVIMLPMFQLMQSIK

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=220238 B4602_RS07875 WP_000776421.1 1572207..1573277(-) (comGB) [Staphylococcus aureus strain ATCC 6538]
GTGAAACTACAATGGATAAATACATTTAAACTACATTCTAAGAAGCGACAATTAAGTAAGGCCCAACAAATCGATTTACT
TTCAAATTTATGTAATTTGTTGAAATATGGTTTCACTCTGTATCAAAGTTTTCAATTTTTAAATCTTCAAATGACATATA
AAAATAAGCAATTAGGTACCACCATTCTAAGTGAAATTTCAAATGGTGCACCATGCAATCAAATATTATCACTGATAGGT
TATAGCGATACTATCGTCATGCAAGTATATTTGGCAGAAAGATTTGGCAATATTATAGACGTTCTAGAAGAAACCGTAAA
TTATATGAAAGTGAATAGAAAGTCAGAACAACGATTGTTAAAGACACTGCAATACCCCTTAATACTAGTTTCTATCTTTA
TTGCTATGATTATTATATTAAACCTCACAGTAATTCCACAGTTTCAACAATTATATACTTCTATGAATATTCAACTATCT
TCTTTTCAAAAAACATTGTCTTTTTTCATTACCAGCTTACCTACTATAATTGTAGTAATGCTCATAATAGTATCTATGTT
GGCTATTATTATGAAATTAATTTATAACAATTTAAATATGCTCAATAAGATAAACTTTGTGATGAAACTACCGCTAATAT
CAGGCTATTTCCAATTATTTAAAACTTATTTTGTAACTAATGAATTAGTGTTGTTTTATAAAAATGGTATTACACTTCAA
TCAATAGTAGACGTTTATATTAACCATAGTAGTGATCCATTTAGACAGTTTCTAGGTAAATACTTATTAACTTATTCAGA
AATGGGATATGGTTTGCCTCAAATTTTAGAAAAACTAAAATGCTTTAAGCCTCAATTAATTAAGTTTGTGCTACAAGGTG
AAAAGAGAGGGAAGCTAGAAGTAGAACTAAAGTTATATTCGCAAATATTAGTAAAACAAATAGAAGATAAAGCGATAAAA
CAGACTCAGTTTTTACAGCCTATTTTATTTTTGATTTTAGGTTTATTTATTGTCGCAATTTATTTAGTAATTATGTTACC
AATGTTTCAATTGATGCAAAGTATAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(227-347)

Type II secretion system (T2SS), protein F (T2SSF)

(27-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

99.719

100

0.997
  comGB Staphylococcus aureus N315

99.719

100

0.997

Multiple sequence alignment