Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   CXX37_RS21270 Genome accession   NZ_CP025842
Coordinates   4226337..4227074 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 720632     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4221337..4232074
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXX37_RS21240 - 4221663..4221860 (-) 198 Protein_4125 hypothetical protein -
  CXX37_RS21245 aroF 4222070..4223140 (+) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  CXX37_RS21250 tyrA 4223151..4224272 (+) 1122 WP_000225229.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  CXX37_RS21255 pheA 4224315..4225475 (-) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  CXX37_RS21260 pheL 4225574..4225621 (-) 48 WP_010723158.1 phe operon leader peptide -
  CXX37_RS21265 raiA 4225725..4226066 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  CXX37_RS21270 comL 4226337..4227074 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  CXX37_RS21275 rluD 4227209..4228189 (+) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  CXX37_RS21280 yfiH 4228186..4228917 (+) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  CXX37_RS21285 clpC 4229047..4231620 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=220060 CXX37_RS21270 WP_000197686.1 4226337..4227074(-) (comL) [Escherichia coli strain 720632]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=220060 CXX37_RS21270 WP_000197686.1 4226337..4227074(-) (comL) [Escherichia coli strain 720632]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment