Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   BV083_RS05360 Genome accession   NZ_CP020006
Coordinates   1069520..1070032 (+) Length   170 a.a.
NCBI ID   WP_005651545.1    Uniprot ID   A0A0H3PJN2
Organism   Haemophilus influenzae strain 48P106H1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1064520..1075032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV083_RS05340 (BV083_1088) nrfF 1064820..1065974 (-) 1155 WP_005686194.1 heme lyase NrfEFG subunit NrfF -
  BV083_RS05345 (BV083_1089) - 1065971..1066501 (-) 531 WP_005659175.1 DsbE family thiol:disulfide interchange protein -
  BV083_RS05350 (BV083_1090) nrfE 1066501..1068408 (-) 1908 WP_005659178.1 heme lyase NrfEFG subunit NrfE -
  BV083_RS05355 (BV083_1091) suhB 1068517..1069320 (-) 804 WP_005659182.1 inositol-1-monophosphatase -
  BV083_RS05360 (BV083_1092) comN 1069520..1070032 (+) 513 WP_005651545.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  BV083_RS05365 (BV083_1093) comO 1070032..1070748 (+) 717 WP_005655922.1 type II secretion system protein J Machinery gene
  BV083_RS05370 (BV083_1094) comP 1070763..1071446 (+) 684 WP_005659188.1 DUF2572 family protein Machinery gene
  BV083_RS05375 (BV083_1095) comQ 1071439..1071726 (+) 288 WP_005655928.1 DUF5374 domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 19877.15 Da        Isoelectric Point: 8.9743

>NTDB_id=219774 BV083_RS05360 WP_005651545.1 1069520..1070032(+) (comN) [Haemophilus influenzae strain 48P106H1]
MQKGMTLVELLIGLAIISIVLNFAVPLWKTDSPKTILAKEQHRLYLFLRQIQARAENSSEVWFLLINRNLATQQWCLTAQ
VKNNQTCDCLNPINCPKEVYAHFYYPYFPNKTMIQSHHIYPKEITRFDGIRNTIVTRCFILQAENERTLFLFFNVGSIRL
KTNQFDSACN

Nucleotide


Download         Length: 513 bp        

>NTDB_id=219774 BV083_RS05360 WP_005651545.1 1069520..1070032(+) (comN) [Haemophilus influenzae strain 48P106H1]
ATGCAGAAAGGTATGACATTAGTGGAATTATTGATTGGGTTAGCCATTATCAGTATTGTGCTGAATTTTGCAGTACCATT
ATGGAAAACCGATTCGCCTAAAACGATTTTAGCCAAAGAGCAACATCGCCTGTATTTATTTCTACGCCAAATTCAGGCTC
GGGCAGAAAATTCATCGGAAGTGTGGTTTTTACTTATCAATCGTAACCTTGCGACACAGCAATGGTGCTTAACGGCACAA
GTAAAAAATAACCAAACTTGTGATTGTTTAAATCCGATAAATTGCCCGAAAGAGGTTTATGCTCATTTTTACTACCCTTA
TTTTCCTAACAAAACGATGATTCAAAGTCATCATATTTATCCAAAAGAAATCACGAGATTTGATGGCATTCGTAATACTA
TCGTTACTCGTTGCTTTATTTTGCAAGCTGAAAATGAACGTACGTTATTTTTATTTTTCAATGTTGGCAGTATTCGTTTG
AAAACTAATCAATTTGATAGTGCTTGTAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-21)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3PJN2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

98.824

100

0.988

Multiple sequence alignment