Detailed information NTG0219497

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: LS41612_RS07600
• Genome accession: NZ_CP019980
• Coordinates: 1523210..1525654 (+)
• Length: 814 a.a.
• NCBI ID: WP_024363122.1
• Uniprot ID: -
• Organism: Lysinibacillus sphaericus strain DSM 28
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1518210..1530654

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LS41612_RS07575 (LS41612_07555)	mnmA	1518834..1519958 (+)	1125	WP_024363127.1	tRNA 2-thiouridine(34) synthase MnmA	-
LS41612_RS07580 (LS41612_07560)	-	1520072..1520731 (+)	660	WP_024363126.1	lipopolysaccharide assembly protein LapB	-
LS41612_RS07585 (LS41612_07565)	-	1520976..1521716 (-)	741	WP_024363125.1	GTP pyrophosphokinase family protein	-
LS41612_RS07590 (LS41612_07570)	-	1521965..1522252 (-)	288	WP_024363124.1	hypothetical protein	-
LS41612_RS07595 (LS41612_07575)	hisA	1522249..1523016 (-)	768	WP_024363123.1	phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase	-
LS41612_RS07600 (LS41612_07580)	recD2	1523210..1525654 (+)	2445	WP_024363122.1	ATP-dependent RecD-like DNA helicase	Machinery gene
LS41612_RS07605 (LS41612_07585)	-	1525683..1527392 (+)	1710	WP_024363121.1	polysaccharide deacetylase family protein	-
LS41612_RS07610 (LS41612_07590)	-	1527513..1527701 (-)	189	WP_024363120.1	hypothetical protein	-
LS41612_RS07615 (LS41612_07595)	hpaB	1528052..1529488 (+)	1437	WP_024363119.1	4-hydroxyphenylacetate 3-monooxygenase, oxygenase component	-

Sequence

Protein

• Length: 814 a.a.
• Molecular weight: 91308.44 Da
• Isoelectric Point: 4.8701

>NTDB_id=219497 LS41612_RS07600 WP_024363122.1 1523210..1525654(+) (recD2) [Lysinibacillus sphaericus strain DSM 28]
MTENLDLFELNKLFILGRPIVSIFHNVQNMYSIVRVKIQETNLQYEDKEIIVVGYFPQLQMDEQYRFTGTMRQHPKYGVQ
FQVETFTKEVPATEQGIVHYLSSDLFVGIGKKTAETIVEKLGPNTIRLILEDPNVLDGVPRLSAEKKEVIHRTIEQNLGL
ERVMIQLNEWGFGPQLGMKIYQTYRTETIDFLTENPYRLIEDVDGVGFFRADELGAKLGITGNHPDRIKAAILHILNTAA
LSDGHVFLDAEHVLPQVKDMLEQSQRQEIPYEAISKACIDLREENKIYGEETRLYLPSLYFSEIGIASKIIALTERNSQA
KHFSKDEIRKAIGETEALLSVTYAETQAFAIEQALNSAVMILTGGPGTGKTTVVRGIVEVYAKLHGLALNPKEYAQKEEP
FPIILCAPTGRAAKRLAESTELPAMTIHRLLGFTGQEKEEETEREVTGKLIIVDEMSMVDTWLAHQLLKSLHEDVQVVFV
GDQDQLPPVGPGQVLKDLLASQQIPTVELTDVYRQAEGSTIIELAHQIKRGTIPNDLTMKTSDRSFIKASSEQVANVVTQ
VVKSAVAKGQEIRNIQVLAPMYKGPAGIDNLNKLIQALVNPNDTGTRKELVFGDVTYRIKDKVLQLVNQPESNVFNGDMG
EVISIIKAKETVEKQDLLVVSFDGIEVTYQRSDLNQLTLAYCCSIHKSQGSEFQTVIMPVVRGYSKMLRRNLLYTGITRA
KNFLILCGEPDVLASGLQRTDDLQRFTSLRARLNPMEASNEVILVEETQTQQNEENNQQEDATTVLQLTVETLPSIHPMI
GMDGISPYDFMDES

Nucleotide

• Length: 2445 bp

>NTDB_id=219497 LS41612_RS07600 WP_024363122.1 1523210..1525654(+) (recD2) [Lysinibacillus sphaericus strain DSM 28]
ATGACAGAAAATCTAGATTTATTTGAACTGAATAAGCTATTTATTCTTGGACGTCCGATTGTCTCTATTTTCCATAATGT
TCAAAATATGTATTCTATTGTGCGCGTGAAAATTCAAGAAACAAATTTGCAATATGAAGATAAGGAAATTATTGTCGTTG
GTTATTTCCCACAATTGCAAATGGACGAACAATATCGTTTTACAGGAACGATGAGACAGCATCCAAAATATGGTGTACAA
TTTCAAGTTGAAACCTTTACAAAAGAAGTGCCCGCAACTGAGCAAGGTATCGTTCATTATTTATCGAGTGATTTATTTGT
TGGTATTGGAAAAAAAACGGCTGAAACAATTGTAGAGAAACTTGGACCCAATACAATCCGTCTTATATTAGAAGACCCGA
ATGTCCTTGATGGTGTACCACGACTATCTGCTGAAAAAAAGGAAGTTATTCATCGTACCATTGAGCAAAATCTTGGATTG
GAACGGGTTATGATTCAGTTAAATGAATGGGGATTTGGCCCGCAGCTCGGTATGAAAATATATCAAACATATCGTACAGA
GACGATTGATTTTTTAACTGAAAACCCTTATCGACTCATTGAAGATGTGGACGGTGTCGGTTTCTTTCGGGCAGATGAGC
TTGGTGCAAAATTAGGTATTACAGGCAATCATCCTGACCGTATTAAGGCGGCTATTTTACATATTCTAAATACAGCAGCG
TTATCGGATGGTCATGTATTTTTAGATGCGGAACATGTATTACCACAAGTGAAAGATATGCTGGAGCAAAGTCAACGCCA
AGAAATACCATACGAAGCAATTTCCAAGGCATGTATCGATTTGCGTGAGGAAAATAAAATCTATGGTGAAGAAACGAGAC
TATATTTGCCATCTCTATATTTTTCGGAGATTGGTATTGCCTCAAAAATAATTGCGCTAACGGAACGCAATAGTCAAGCG
AAGCATTTTAGTAAAGATGAAATTCGCAAGGCAATCGGCGAAACAGAAGCATTGTTAAGTGTCACATATGCAGAAACACA
AGCTTTTGCAATTGAACAAGCACTTAATTCAGCTGTCATGATTTTAACAGGTGGTCCTGGTACAGGAAAAACGACGGTTG
TTAGGGGCATTGTTGAAGTATATGCCAAACTTCACGGCCTTGCACTAAATCCAAAGGAATATGCGCAAAAAGAAGAGCCG
TTCCCTATTATTTTATGTGCACCAACAGGTCGTGCAGCTAAACGTCTAGCTGAGTCTACGGAACTACCTGCGATGACCAT
CCACCGCTTATTAGGCTTTACAGGTCAGGAGAAAGAGGAAGAAACGGAGCGAGAGGTTACTGGAAAACTGATCATTGTCG
ATGAAATGTCCATGGTAGATACATGGCTTGCCCATCAATTATTAAAATCATTACATGAGGATGTGCAAGTTGTTTTTGTT
GGCGATCAAGATCAGCTACCGCCAGTAGGTCCAGGACAAGTGCTCAAAGATTTACTTGCTTCGCAACAAATACCGACTGT
TGAACTGACAGATGTTTATCGTCAGGCGGAAGGTTCAACCATTATTGAACTCGCCCATCAGATTAAACGTGGTACAATTC
CAAATGATCTAACGATGAAAACATCGGATCGTTCCTTTATTAAAGCTTCTTCAGAGCAAGTGGCAAATGTTGTAACACAA
GTTGTGAAAAGTGCAGTAGCAAAAGGGCAAGAAATCCGAAATATCCAAGTTTTAGCACCGATGTATAAAGGACCAGCCGG
AATCGATAACTTAAATAAATTGATTCAAGCGCTTGTCAATCCGAATGATACTGGTACAAGAAAGGAACTTGTCTTTGGTG
ATGTAACGTATCGCATAAAGGATAAAGTATTACAGCTTGTAAACCAGCCAGAAAGCAATGTTTTTAATGGGGATATGGGT
GAAGTCATTAGTATTATTAAAGCAAAGGAAACGGTGGAGAAGCAGGATTTACTTGTCGTGTCTTTTGATGGAATTGAAGT
AACTTATCAGCGCAGCGATCTTAATCAATTAACATTGGCTTATTGTTGCTCCATTCATAAATCACAAGGTTCAGAATTTC
AAACGGTGATTATGCCAGTGGTGCGTGGCTATTCGAAAATGCTACGTCGTAATTTATTATATACTGGTATTACACGTGCG
AAAAATTTCTTAATTTTATGTGGTGAACCAGATGTGCTAGCTAGCGGTTTACAACGAACAGACGATTTACAACGCTTCAC
GTCTCTGCGCGCACGACTTAACCCAATGGAAGCATCTAATGAGGTTATATTAGTGGAGGAGACGCAAACGCAACAAAATG
AAGAGAACAATCAACAAGAGGATGCTACGACTGTGCTACAGCTAACGGTCGAAACCTTACCATCCATCCATCCAATGATT
GGAATGGATGGCATATCTCCATATGATTTTATGGATGAATCATAA

Domains

Predicted by InterproScan.

• UvrD-like helicase C-terminal domain (UvrD_C_2) (680-727)

• Helix-hairpin-helix containing domain (HHH_RecD2) (159-247)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (591-661)

• AAA domain (AAA_30) (343-550)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	52.889	97.789	0.517