Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   B4W62_RS02200 Genome accession   NZ_CP019977
Coordinates   442249..442764 (+) Length   171 a.a.
NCBI ID   WP_058914584.1    Uniprot ID   -
Organism   Campylobacter coli strain aerotolerant OR12     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 437249..447764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B4W62_RS02175 - 437705..438043 (+) 339 WP_002777761.1 hypothetical protein -
  B4W62_RS02180 - 438052..438777 (+) 726 WP_002780542.1 phosphatidate cytidylyltransferase -
  B4W62_RS02185 dxr 438774..439850 (+) 1077 WP_002777756.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  B4W62_RS02190 - 439847..441241 (+) 1395 WP_002777754.1 M99 family carboxypeptidase catalytic domain-containing protein -
  B4W62_RS02195 tsaD 441238..442245 (+) 1008 WP_002777752.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  B4W62_RS02200 ctsG 442249..442764 (+) 516 WP_058914584.1 type II secretion system protein Machinery gene
  B4W62_RS02205 - 442764..444005 (+) 1242 WP_058914585.1 DUF2920 family protein -
  B4W62_RS02210 - 444015..445838 (+) 1824 WP_058914586.1 motility associated factor glycosyltransferase family protein -
  B4W62_RS02215 - 445835..447652 (+) 1818 WP_058914587.1 motility associated factor glycosyltransferase family protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18767.51 Da        Isoelectric Point: 5.7789

>NTDB_id=219366 B4W62_RS02200 WP_058914584.1 442249..442764(+) (ctsG) [Campylobacter coli strain aerotolerant OR12]
MKRAFTILELVFVIVILGILAAIALPKFSSSRDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLGN
FNGTKEVNFRVGDDKECLKLVFIDRTDFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=219366 B4W62_RS02200 WP_058914584.1 442249..442764(+) (ctsG) [Campylobacter coli strain aerotolerant OR12]
GTGAAAAGAGCTTTTACTATATTAGAACTTGTTTTTGTGATTGTTATTTTAGGAATTTTAGCAGCGATTGCTTTGCCAAA
ATTCAGTTCTAGTAGAGATGAAGCTGAAGTGAGTAAATCCTTAAACAATCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGTGGGGTTGAAAATGTCGATCTTGGCAAT
TTCAATGGCACAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAGATAGAACGGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGCAAAAATGCTATCATCAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGCAATAAAGCTTGTGTGATCTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

91.228

100

0.912

Multiple sequence alignment