Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   A9237_RS07490 Genome accession   NZ_CP019959
Coordinates   1669342..1670067 (+) Length   241 a.a.
NCBI ID   WP_078607970.1    Uniprot ID   -
Organism   Vibrio owensii strain XSBZ03     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1664342..1675067
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9237_RS07475 (A9237_07475) - 1665447..1667768 (+) 2322 WP_078607969.1 Tex family protein -
  A9237_RS07480 (A9237_07480) - 1667893..1668357 (-) 465 WP_005430182.1 hypothetical protein -
  A9237_RS07485 (A9237_07485) bioH 1668493..1669257 (-) 765 WP_078608709.1 pimeloyl-ACP methyl ester esterase BioH -
  A9237_RS07490 (A9237_07490) comF 1669342..1670067 (+) 726 WP_078607970.1 phosphoribosyltransferase family protein Machinery gene
  A9237_RS07495 (A9237_07495) nfuA 1670165..1670749 (+) 585 WP_005434470.1 Fe-S biogenesis protein NfuA -
  A9237_RS07500 (A9237_07500) nudE 1670924..1671487 (+) 564 WP_005434477.1 ADP compounds hydrolase NudE -
  A9237_RS07505 (A9237_07505) cysQ 1671532..1672359 (+) 828 WP_005434478.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  A9237_RS07510 (A9237_07510) - 1672647..1673408 (-) 762 WP_078607971.1 type II secretion system protein N -
  A9237_RS07515 (A9237_07515) - 1673410..1673901 (-) 492 WP_009707965.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27711.83 Da        Isoelectric Point: 8.2460

>NTDB_id=219185 A9237_RS07490 WP_078607970.1 1669342..1670067(+) (comF) [Vibrio owensii strain XSBZ03]
MLSHQWQNIMHRVLGSQCGLCRFPISVEQKPNPMRWCDRCFEHLTPIKRCTRCGLKMTEEESHTSTECGECLKEPPPWQR
LYTLGDYDFPLSNQVQRFKDHGEAWHVGALTQLLAERIEHPAPVITCVPIHWQRYLKRGFNQSHFLAKHLAHHLNVRYED
KVFKRAKSVESQRGNKKASREQNLKGAFTLQGEVNFSHVAIVDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPGS
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=219185 A9237_RS07490 WP_078607970.1 1669342..1670067(+) (comF) [Vibrio owensii strain XSBZ03]
ATGTTATCTCATCAATGGCAAAACATCATGCACCGCGTACTTGGCAGCCAATGTGGTTTATGCCGATTTCCGATCTCCGT
TGAACAGAAACCAAACCCAATGCGGTGGTGCGACCGTTGTTTTGAACACCTCACGCCCATCAAACGCTGCACTCGTTGTG
GTTTAAAAATGACAGAAGAGGAATCACATACCTCAACAGAGTGCGGTGAGTGCCTGAAAGAGCCACCACCTTGGCAACGT
TTGTATACGTTGGGAGATTATGACTTCCCTCTGTCTAACCAAGTGCAACGCTTTAAAGATCATGGTGAGGCATGGCATGT
CGGCGCACTCACTCAATTACTGGCCGAACGAATTGAACACCCAGCTCCAGTGATTACTTGTGTACCAATACATTGGCAAC
GCTATTTAAAACGAGGATTTAACCAAAGCCATTTCCTAGCCAAACATCTCGCCCACCATTTAAATGTGCGATATGAAGAT
AAGGTATTTAAACGCGCAAAAAGCGTCGAATCGCAACGAGGAAATAAAAAAGCCAGTCGTGAACAGAATTTAAAAGGGGC
ATTTACCCTACAAGGTGAGGTGAACTTTTCCCACGTAGCGATTGTGGATGATGTGGTTACAACAGGTAGTACGGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACTCCTGCCCCAGGCTCA
CTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(146-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

87.137

100

0.871
  comF Vibrio cholerae strain A1552

47.059

98.755

0.465

Multiple sequence alignment