Detailed information NTG0021915

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: PG_RS04875
• Genome accession: NC_002950
• Coordinates: 1173745..1175049 (+)
• Length: 434 a.a.
• NCBI ID: WP_010956212.1
• Uniprot ID: Q7MVG1
• Organism: Porphyromonas gingivalis W83
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1168745..1180049

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PG_RS04865 (PG1101)	-	1169099..1170559 (-)	1461	WP_005873636.1	sodium:solute symporter	-
PG_RS04870 (PG1102)	-	1170950..1173598 (-)	2649	WP_230455974.1	DUF5686 and carboxypeptidase-like regulatory domain-containing protein	-
PG_RS04875 (PG1103)	rarA	1173745..1175049 (+)	1305	WP_010956212.1	replication-associated recombination protein A	Machinery gene
PG_RS04880 (PG1104)	-	1175075..1175842 (+)	768	WP_005873692.1	tRNA1(Val) (adenine(37)-N6)-methyltransferase	-
PG_RS04885 (PG1105)	rpoN	1175806..1177263 (-)	1458	WP_005873663.1	RNA polymerase factor sigma-54	-
PG_RS04890 (PG1106)	murF	1177257..1178561 (-)	1305	WP_005873680.1	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	-

Sequence

Protein

• Length: 434 a.a.
• Molecular weight: 48303.17 Da
• Isoelectric Point: 5.6527

>NTDB_id=21915 PG_RS04875 WP_010956212.1 1173745..1175049(+) (rarA) [Porphyromonas gingivalis W83]
MKQIPLAERMRPKTLADYVGQQHLIGSGAVLRQMIEQGQTPSMILWGPPGVGKTTLAEIIAHEVDAPFYTLSAVSSGVKE
VREVIADIESNRGNLFDKGGRAILFIDEIHRFSKSQQDSLLAAVERGIVTLIGATTENPSFEVIRPLLSRCQVYVLKPQS
DEDLLLLAHRAIDRDELLAAKHPVLEETEALLLYAGGDARKLLNILDLLATSEVEDRLVITNEKIRQRLQENPAAFDKGG
ELHYDIASAFIKSIRGSDPDAAIYWLARLIDGGEEPSFIARRLIISASEDIGLANPNAMLIAMACAEALDRIGWPEGRIP
LAEATIYLATSEKSNSAYLAIDSALEYVRQSGNLPVPLHLRNAPTRLMADLDYGKGYKYSHDFPEHFVSQQYLPDKAANT
SFWTPQMHTVHEAKLGERMKRWWKREKSQKDTAE

Nucleotide

• Length: 1305 bp

>NTDB_id=21915 PG_RS04875 WP_010956212.1 1173745..1175049(+) (rarA) [Porphyromonas gingivalis W83]
ATGAAACAAATACCCTTGGCCGAGAGAATGCGTCCAAAAACGCTGGCCGACTATGTGGGGCAGCAGCATCTGATCGGATC
GGGGGCTGTGCTCCGGCAGATGATCGAGCAGGGACAGACGCCATCCATGATCCTGTGGGGGCCTCCCGGAGTAGGCAAGA
CTACGCTGGCCGAAATCATCGCTCATGAAGTGGATGCACCTTTCTATACATTGAGTGCGGTTAGCTCCGGTGTGAAGGAA
GTGCGGGAAGTAATAGCCGACATCGAATCCAATCGTGGCAATCTGTTCGACAAAGGAGGACGCGCCATCCTCTTCATCGA
CGAGATACACCGTTTCAGCAAGAGTCAGCAGGATTCACTTCTGGCAGCCGTAGAGCGAGGAATAGTGACGCTGATCGGTG
CCACGACCGAAAATCCGAGTTTCGAAGTAATACGTCCGCTCCTATCGCGCTGTCAGGTCTATGTGCTCAAACCCCAAAGT
GATGAGGATCTGCTGCTACTGGCACACAGGGCTATCGATCGGGACGAACTGCTGGCTGCCAAGCATCCTGTACTGGAGGA
GACGGAAGCTCTGCTTCTCTATGCCGGAGGCGATGCACGAAAGCTGCTGAACATCCTCGACCTTCTGGCCACAAGCGAAG
TGGAAGACCGGCTCGTCATTACCAACGAAAAGATACGTCAGCGCTTGCAAGAAAACCCCGCTGCTTTCGACAAGGGAGGC
GAACTCCACTATGATATAGCATCCGCCTTTATCAAAAGTATTCGGGGCAGTGATCCCGACGCGGCTATTTACTGGCTGGC
GCGCCTTATAGATGGTGGGGAGGAACCCTCATTCATCGCTCGCAGGCTGATCATATCGGCTTCGGAAGACATCGGCCTGG
CTAATCCGAATGCCATGCTCATCGCCATGGCCTGTGCCGAGGCTTTAGACCGAATCGGCTGGCCTGAAGGCCGTATTCCA
TTGGCCGAGGCTACCATTTATTTGGCTACTTCGGAGAAGAGCAATTCAGCTTATTTGGCCATCGACTCCGCTCTCGAATA
TGTCCGTCAATCAGGTAATCTTCCCGTGCCCCTACACTTGCGTAATGCCCCTACCCGTCTGATGGCCGACCTTGACTATG
GCAAGGGTTACAAATACTCGCATGATTTTCCGGAACACTTCGTCTCACAGCAATATCTGCCCGACAAAGCTGCTAACACC
TCTTTCTGGACACCTCAAATGCACACAGTGCATGAAGCCAAGCTGGGAGAACGGATGAAGCGATGGTGGAAGAGGGAAAA
ATCCCAAAAGGATACAGCAGAATAA

Domains

Predicted by InterProScan.

• AAA C-terminal domain (AAA_assoc_2) (188-255)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (10-131)

• MgsA AAA+ ATPase C terminal (MgsA_C) (256-423)

3D structure

• AlphaFold DB: Q7MVG1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	40.187	98.618	0.396