Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   AOZ05_RS08585 Genome accession   NZ_CP019945
Coordinates   1665001..1666071 (-) Length   356 a.a.
NCBI ID   WP_000776422.1    Uniprot ID   -
Organism   Staphylococcus aureus strain BA01611     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1660001..1671071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOZ05_RS08545 gcvPA 1660178..1661524 (-) 1347 WP_000019690.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  AOZ05_RS08550 gcvT 1661544..1662635 (-) 1092 WP_000093348.1 glycine cleavage system aminomethyltransferase GcvT -
  AOZ05_RS08555 - 1662794..1663318 (-) 525 WP_001015120.1 shikimate kinase -
  AOZ05_RS08560 - 1663308..1663454 (-) 147 WP_001792109.1 hypothetical protein -
  AOZ05_RS08565 comGF 1663551..1664048 (-) 498 WP_029694050.1 competence type IV pilus minor pilin ComGF Machinery gene
  AOZ05_RS08570 comGE 1663966..1664265 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  AOZ05_RS08575 comGD 1664252..1664698 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  AOZ05_RS08580 comGC 1664676..1664987 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  AOZ05_RS08585 comGB 1665001..1666071 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  AOZ05_RS08590 comGA 1666043..1667017 (-) 975 WP_031587486.1 competence type IV pilus ATPase ComGA Machinery gene
  AOZ05_RS08595 - 1667069..1667692 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  AOZ05_RS08600 - 1667689..1668018 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  AOZ05_RS08605 - 1668018..1669004 (-) 987 WP_000161314.1 ROK family glucokinase -
  AOZ05_RS08610 - 1669001..1669204 (-) 204 WP_000087561.1 YqgQ family protein -
  AOZ05_RS08615 - 1669185..1670648 (-) 1464 WP_001017858.1 rhomboid family protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41447.84 Da        Isoelectric Point: 10.0606

>NTDB_id=219042 AOZ05_RS08585 WP_000776422.1 1665001..1666071(-) (comGB) [Staphylococcus aureus strain BA01611]
MKLQWINTFKLHSKKRQLSKAQQIDLLSNLCNLLKYGFTLYQSFQFLNLQMTYKNKQLGTTILSEISNGAPCNQILSLIG
YSDTIVMQVYLAERFGNIIDVLEETVNYMKVNRKSEQRLLKTLQYPLILVSIFIAMIIILNLTVIPQFQQLYTSMNIQLS
SFQKTLSFFITSLPTIIVVMLIIVSMLAIIMKLIYNNLNMLNKINFVMKLPLISGYFQLFKTYFVTNELVLFYKNGITLQ
SIVDVYINHSSDPFRQFLGKYLLTYSEMGYGLPQILEKLKCFKPQLIKFVLQGEKRGKLEVELKLYSQILVKQIEDKAIK
QTQFLQPILFLILGLFIVAIYLVIMLPMFQMMQSIK

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=219042 AOZ05_RS08585 WP_000776422.1 1665001..1666071(-) (comGB) [Staphylococcus aureus strain BA01611]
GTGAAACTACAATGGATAAATACATTTAAACTACATTCTAAGAAGCGACAATTAAGTAAGGCCCAACAAATCGACTTACT
TTCAAATTTATGTAATTTGTTGAAATATGGTTTCACTCTGTATCAAAGTTTTCAATTTTTAAATCTTCAAATGACATATA
AAAATAAGCAATTAGGTACCACCATTCTAAGTGAAATTTCAAATGGTGCACCATGCAATCAAATATTATCACTGATAGGT
TATAGCGATACTATCGTCATGCAAGTATATTTGGCAGAAAGATTTGGCAATATTATAGACGTTCTAGAAGAAACCGTAAA
TTATATGAAAGTGAATAGAAAGTCAGAACAACGATTGTTAAAGACACTGCAATACCCCTTAATACTAGTTTCTATCTTTA
TTGCTATGATTATTATATTAAACCTCACAGTAATTCCACAGTTTCAACAATTATATACTTCTATGAATATTCAACTATCT
TCTTTTCAAAAAACATTGTCTTTTTTCATTACCAGCTTACCTACTATAATTGTAGTAATGCTCATAATAGTATCTATGTT
GGCTATTATTATGAAATTAATTTATAACAATTTAAATATGCTCAATAAGATAAACTTTGTGATGAAACTACCGCTAATAT
CAGGCTATTTCCAATTATTTAAAACTTATTTTGTAACTAATGAATTAGTGTTGTTTTATAAAAATGGTATTACACTTCAA
TCAATAGTAGACGTTTATATTAACCATAGTAGTGATCCATTTAGACAGTTTCTAGGTAAATACTTATTAACTTATTCAGA
AATGGGATATGGTTTGCCTCAAATTTTAGAAAAACTAAAATGCTTTAAGCCTCAATTAATTAAGTTTGTGCTACAAGGTG
AAAAGAGAGGGAAGCTAGAAGTAGAACTAAAGTTATATTCGCAAATATTAGTAAAACAAATAGAAGATAAAGCGATAAAA
CAGACTCAGTTTTTACAGCCTATTTTATTTTTGATTTTAGGTTTATTTATTGTCGCAATTTATTTAGTAATTATGTTACC
AATGTTTCAAATGATGCAAAGTATAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(227-347)

Type II secretion system (T2SS), protein F (T2SSF)

(27-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

100

100

1
  comGB Staphylococcus aureus N315

100

100

1

Multiple sequence alignment