Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   SPSF3K_RS01580 Genome accession   NZ_CP025420
Coordinates   320775..323177 (-) Length   800 a.a.
NCBI ID   WP_003107624.1    Uniprot ID   A0ABN0IQK1
Organism   Streptococcus parauberis strain SPOF3K     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 315775..328177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPSF3K_RS01560 (SPSF3K_00323) - 316085..316522 (-) 438 WP_003102732.1 GNAT family N-acetyltransferase -
  SPSF3K_RS01565 (SPSF3K_00324) pflB 316581..318908 (-) 2328 WP_003103702.1 formate C-acetyltransferase -
  SPSF3K_RS01570 (SPSF3K_00325) dinB 319114..320208 (+) 1095 WP_003107626.1 DNA polymerase IV -
  SPSF3K_RS01575 (SPSF3K_00326) - 320242..320697 (-) 456 WP_003107625.1 hypothetical protein -
  SPSF3K_RS01580 (SPSF3K_00327) recD/recD2/recDB 320775..323177 (-) 2403 WP_003107624.1 ATP-dependent RecD-like DNA helicase Machinery gene
  SPSF3K_RS01585 (SPSF3K_00328) lepB 323235..323828 (-) 594 WP_003103516.1 signal peptidase I -
  SPSF3K_RS01590 (SPSF3K_00329) rnhC 323837..324751 (-) 915 WP_037620056.1 ribonuclease HIII -
  SPSF3K_RS01595 (SPSF3K_00330) zapA 324870..325178 (+) 309 WP_003105645.1 cell division protein ZapA -
  SPSF3K_RS01600 (SPSF3K_00331) - 325181..325726 (+) 546 WP_003104122.1 CvpA family protein -
  SPSF3K_RS01605 (SPSF3K_00332) mutS/mutS2 325793..328129 (+) 2337 WP_037620053.1 endonuclease MutS2 Machinery gene

Sequence

Protein


Download         Length: 800 a.a.        Molecular weight: 89761.82 Da        Isoelectric Point: 4.6025

>NTDB_id=218921 SPSF3K_RS01580 WP_003107624.1 320775..323177(-) (recD/recD2/recDB) [Streptococcus parauberis strain SPOF3K]
MEYFFSGTVDRIIFENSSNFFKILNLMIEDTDSDFDDFEIIITGTMADIMEGEDYTFWGQLSQHPKYGQQLQLSRYQRAK
PSSSGLIKYFSSDHFKGIGKKTAERIVSLYGDNTIDKILDDPSKLEDINGFSKANREAFVAKLRINYGTEQIIAALVELG
LSNRMAFQIYDQYKEEAVERVRTNPYQLVEDIQGIGFKMSDKLAQEIGIADSAPERFRAALLHSLLEQSISQGDTYIEAR
DLLAYAIDLLEDSRQIECDPAQVAQELSHLISDEKVYNAGTKIFDASLFTAEEGIKNQLQRLLDTPFEKQISQDKIEKEV
QAIEKEFAISYDQVQKDAIYQALTSKVFILTGGPGTGKTTVIRGILEAYARINDIDLNKKDLPIVLAAPTGRAARRMNEL
TGLPSATIHRHLGLNGDNDYQAMEDYLDCDLLVVDEFSMVDTWLANQLLGAISSNTQIIIVGDSDQLPSVGPGQVLADLL
KITSLPQIALRKIFRQSADSTIVDLANQMRQGILPVDFRDKKADRSYFDAMPQHVPTMVTKIVASAVKSGIPADEIQILA
PMYKGQAGINNLNQLMQELLNPLDNGTEFVFNEIHFRKGDKVLHLVNDAQLNVFNGDIGYITDLIPAKYTESKQDEIMMD
FDGSEVTYPRNEWLKITLAYAMSIHKSQGSEFQVVILPITRQSGRMLQRNLIYTAVTRSKSKLILLGEHSAFDYAIKNEG
DKRKTFLVQRFDQDLTTESSDQLAKIDTVENSSDSLGQAQNTIAKPLESEEPTILTTANMLSIDPLIGLTDADFKKFFKK

Nucleotide


Download         Length: 2403 bp        

>NTDB_id=218921 SPSF3K_RS01580 WP_003107624.1 320775..323177(-) (recD/recD2/recDB) [Streptococcus parauberis strain SPOF3K]
ATGGAATACTTTTTTTCCGGGACTGTTGATCGCATCATTTTCGAAAATAGCAGTAACTTTTTTAAAATCTTAAACCTAAT
GATTGAAGATACCGACAGTGACTTTGATGACTTTGAAATCATCATTACTGGAACCATGGCTGACATCATGGAGGGAGAAG
ATTATACCTTCTGGGGGCAATTAAGCCAACATCCCAAATATGGCCAACAACTGCAACTCAGCCGTTACCAGCGAGCTAAA
CCAAGTTCATCTGGTCTAATCAAGTACTTTTCCAGTGATCATTTTAAAGGAATTGGGAAAAAGACCGCCGAGAGAATTGT
CTCTTTATACGGTGACAATACGATTGATAAAATTCTTGACGACCCTAGCAAGTTAGAGGATATCAACGGCTTTTCAAAAG
CTAACCGAGAAGCCTTTGTAGCTAAGCTAAGAATCAATTACGGAACAGAACAAATCATCGCTGCACTGGTAGAATTAGGA
TTGTCTAATCGGATGGCCTTCCAAATATACGATCAATATAAAGAAGAAGCTGTCGAACGGGTTAGGACTAATCCCTATCA
ACTCGTAGAAGACATCCAAGGCATCGGCTTTAAAATGTCTGATAAATTAGCTCAGGAAATCGGTATAGCTGATTCTGCAC
CTGAACGGTTTCGGGCTGCTCTATTACATAGTTTATTGGAACAATCAATTAGCCAAGGTGATACCTACATCGAGGCGCGT
GATTTATTAGCCTATGCTATTGATTTGTTAGAAGACTCTCGACAAATTGAATGTGATCCTGCGCAAGTTGCCCAAGAATT
AAGTCATTTAATTTCTGATGAAAAAGTTTATAATGCAGGTACTAAAATATTTGATGCCTCTCTATTTACAGCAGAAGAGG
GAATTAAAAATCAACTTCAACGTTTACTAGATACCCCATTTGAGAAACAAATCAGTCAAGATAAGATTGAAAAAGAAGTA
CAAGCAATTGAGAAGGAATTTGCCATTAGCTATGATCAGGTCCAAAAGGACGCAATTTATCAAGCATTGACCAGCAAGGT
CTTTATCTTAACTGGTGGTCCAGGTACTGGTAAAACAACCGTTATCAGAGGAATTCTAGAAGCTTATGCTCGGATTAATG
ACATTGATTTAAATAAAAAAGATTTACCTATTGTTCTAGCAGCGCCTACTGGTCGAGCTGCTCGTCGGATGAATGAATTA
ACTGGCCTACCAAGTGCCACTATTCATCGTCATTTAGGCTTAAATGGTGACAATGATTACCAAGCCATGGAAGACTACTT
AGACTGTGATTTATTAGTTGTTGATGAATTTTCTATGGTTGATACTTGGTTAGCCAATCAATTATTAGGTGCCATATCAT
CGAATACCCAAATAATCATTGTTGGTGACAGTGACCAGTTACCGTCTGTAGGACCAGGTCAGGTTCTAGCAGATCTTTTG
AAAATTACCAGTCTACCACAAATCGCCCTTCGTAAAATTTTCCGTCAATCAGCTGATTCAACCATCGTTGATTTGGCAAA
TCAAATGCGTCAAGGCATATTGCCAGTAGATTTTCGAGATAAAAAAGCAGACCGTTCTTACTTTGATGCCATGCCTCAAC
ATGTTCCAACTATGGTCACAAAAATTGTCGCTTCTGCTGTTAAAAGTGGTATCCCAGCTGATGAAATTCAGATTCTTGCT
CCCATGTATAAAGGACAAGCAGGCATCAACAATCTCAATCAGCTTATGCAAGAGCTTCTCAATCCATTAGATAATGGTAC
AGAATTTGTCTTTAATGAGATACATTTTCGAAAGGGAGATAAAGTCTTACACTTAGTTAATGATGCCCAATTGAATGTCT
TTAATGGTGATATTGGTTACATTACAGATTTAATTCCAGCCAAGTACACCGAGTCCAAACAAGATGAAATTATGATGGAT
TTTGATGGGTCAGAAGTAACTTATCCTCGCAATGAATGGTTAAAAATCACCTTGGCCTATGCCATGAGTATTCATAAGTC
GCAGGGGAGTGAGTTCCAAGTGGTTATTCTTCCAATCACCCGCCAGAGTGGGCGCATGCTTCAACGGAATCTGATTTATA
CAGCTGTCACAAGGTCAAAGAGTAAATTAATTTTACTGGGTGAGCACTCAGCTTTTGATTATGCAATCAAAAATGAGGGT
GATAAACGAAAAACTTTCCTAGTGCAACGATTTGACCAAGACCTGACAACAGAATCAAGCGACCAATTAGCAAAAATTGA
TACAGTTGAAAACAGTTCGGACAGTCTAGGACAAGCCCAAAATACTATTGCAAAGCCCTTAGAATCTGAAGAACCAACGA
TTTTAACGACAGCAAATATGTTATCTATTGATCCACTGATTGGCTTGACTGATGCTGATTTTAAAAAATTTTTTAAAAAA
TAG

Domains

Predicted by InterProScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(572-641)

Helix-hairpin-helix containing domain (HHH_RecD2)

(146-236)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(659-706)

AAA domain (AAA_30)

(331-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

42.933

93.75

0.402

Multiple sequence alignment