Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   CRH08_RS05100 Genome accession   NZ_CP025419
Coordinates   972827..974563 (+) Length   578 a.a.
NCBI ID   WP_013730350.1    Uniprot ID   -
Organism   Streptococcus suis strain SH0104     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 967827..979563
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CRH08_RS05075 - 970383..971138 (+) 756 WP_013730347.1 class I SAM-dependent methyltransferase -
  CRH08_RS05080 pcp 971135..971782 (+) 648 WP_013730348.1 pyroglutamyl-peptidase I -
  CRH08_RS05085 - 971782..972090 (+) 309 WP_013730349.1 DUF4298 domain-containing protein -
  CRH08_RS05090 rpsP 972215..972487 (+) 273 WP_002940682.1 30S ribosomal protein S16 -
  CRH08_RS05095 - 972509..972751 (+) 243 WP_012028079.1 KH domain-containing protein -
  CRH08_RS05100 rcrP 972827..974563 (+) 1737 WP_013730350.1 ABC transporter ATP-binding protein Regulator
  CRH08_RS05105 rcrQ 974572..976341 (+) 1770 WP_002938582.1 ABC transporter ATP-binding protein Regulator
  CRH08_RS05110 - 976385..977308 (-) 924 WP_002938584.1 polysaccharide deacetylase family protein -
  CRH08_RS05115 - 977413..978699 (+) 1287 WP_002938586.1 homoserine dehydrogenase -
  CRH08_RS05120 thrB 978703..979563 (+) 861 WP_002938588.1 homoserine kinase -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 65109.54 Da        Isoelectric Point: 5.9944

>NTDB_id=218854 CRH08_RS05100 WP_013730350.1 972827..974563(+) (rcrP) [Streptococcus suis strain SH0104]
MNLIWTYLKKYPKWIALDLLGAFLFVVVNLGLPTFLARMIDQGITKNDVSQLYFWAGMMGLIVLLGIVGRVTLAYAAGKL
TTNIVKDIRNDLYEKIQDYSHHEYEQIGVSSLVARMTNDAFVLMQFSEMVLKLGIITPLMMIASVIMTLVTSPSLAWTVA
VAMPFLVFVIFYVATKTRPLSEKQQKRLDTINQYVRENLMGLRVIRAFTREEFQENRFAEVNEEYTDISKKLFNLTGLTE
PLFVQIIIAMIVAIVWFALDPLKTGSLQIGDLVAFIEYSFHALFSFLLFANLFNMYPRMSVSSQRIQKVLDMPISISKNE
EGITKSDTRGYLEFENVTFAYPGETESPVLHNISFKAKPGETIAFIGSTGSGKSSLVNLIPRFYDVTLGRILVDGVDVRR
YNLKALRSKIGFIPQKALLFTGTIAENLKYGKMDASLAELHDATDVAQAKEFIESKEEKFDTHLAEGGSNLSGGQKQRLS
IARAIVKQPDIYIFDDSFSALDYKTDAILRSRLKEVTENATVLIVAQRVGTIMDADQIIVLNEGEIVGRGTHNELMESNE
IYREIANSQLNRQSLTEE

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=218854 CRH08_RS05100 WP_013730350.1 972827..974563(+) (rcrP) [Streptococcus suis strain SH0104]
ATGAATCTGATTTGGACCTATTTGAAAAAATATCCTAAGTGGATTGCCTTAGACTTGTTGGGGGCCTTCTTATTTGTAGT
GGTAAACTTAGGCTTGCCGACTTTTTTGGCTAGGATGATTGACCAAGGAATTACAAAGAACGATGTTAGTCAGCTCTATT
TCTGGGCGGGGATGATGGGATTGATTGTCCTGCTCGGGATTGTTGGTCGAGTGACACTTGCCTATGCAGCTGGAAAATTG
ACTACCAATATCGTCAAAGATATTCGAAATGATCTGTATGAGAAAATTCAGGACTATTCTCATCATGAATATGAGCAGAT
TGGTGTTTCTTCTCTAGTTGCTCGTATGACAAATGATGCTTTTGTTCTCATGCAATTCTCTGAAATGGTCTTGAAACTAG
GTATTATTACACCCTTGATGATGATTGCTTCTGTCATTATGACCTTGGTAACCAGTCCGAGCTTGGCTTGGACAGTAGCA
GTAGCCATGCCGTTTCTAGTTTTTGTTATTTTCTATGTGGCAACAAAAACTCGTCCTCTCTCTGAAAAACAACAGAAACG
ATTGGATACTATCAACCAGTATGTTCGTGAAAATCTCATGGGTTTGCGGGTCATTCGTGCCTTTACACGTGAAGAGTTCC
AAGAAAATCGTTTTGCAGAGGTCAATGAGGAATATACCGATATTTCCAAAAAGCTCTTTAATCTGACTGGATTGACAGAG
CCTCTCTTTGTCCAGATTATCATTGCTATGATTGTGGCCATTGTCTGGTTTGCTTTGGATCCCTTGAAAACAGGCAGTCT
ACAAATCGGTGATTTAGTAGCCTTTATCGAATATAGTTTCCACGCGCTTTTCTCTTTCTTGCTCTTTGCTAACTTGTTTA
ACATGTATCCACGTATGTCGGTATCGAGCCAACGAATTCAGAAAGTCTTGGACATGCCCATTTCCATTTCTAAGAATGAA
GAAGGTATTACTAAATCAGATACTCGTGGTTATTTGGAATTTGAAAATGTAACTTTTGCCTATCCTGGTGAAACGGAATC
GCCTGTTCTCCACAATATTTCATTTAAGGCTAAGCCTGGTGAAACGATTGCCTTTATTGGTTCAACAGGTTCTGGTAAGT
CTTCCTTGGTCAACTTGATTCCACGTTTCTATGATGTGACACTTGGTCGTATCTTGGTGGATGGTGTGGATGTCAGACGC
TACAATCTGAAGGCACTCCGCAGCAAGATTGGCTTTATTCCACAGAAAGCTCTGCTATTTACCGGAACTATCGCGGAAAA
CTTAAAGTACGGTAAGATGGATGCTAGTCTTGCTGAACTTCATGATGCGACAGATGTGGCTCAGGCTAAGGAGTTTATCG
AGAGTAAGGAAGAAAAATTCGACACCCACTTGGCTGAGGGCGGAAGCAACCTGTCAGGCGGGCAAAAGCAACGTTTGTCC
ATTGCACGTGCTATTGTCAAGCAGCCGGATATTTACATTTTTGATGATTCTTTCTCAGCCTTGGATTATAAGACGGATGC
AATTTTGCGGAGTCGTTTGAAGGAAGTGACGGAAAATGCGACGGTGCTAATTGTGGCTCAACGTGTCGGAACCATTATGG
ATGCTGACCAGATTATCGTGCTGAACGAAGGTGAAATCGTTGGCCGCGGCACCCACAATGAATTGATGGAAAGCAATGAG
ATTTACCGAGAAATTGCCAACTCTCAACTTAACCGTCAATCGTTAACAGAAGAATAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(20-280)

ABC transporter (ABC_tran)

(350-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.333

100

0.398