Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   CXR04_RS20925 Genome accession   NZ_CP025407
Coordinates   4789368..4791113 (+) Length   581 a.a.
NCBI ID   WP_101423864.1    Uniprot ID   -
Organism   Streptomyces sp. CMB-StM0423     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4784368..4796113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXR04_RS20900 (CXR04_20900) - 4784601..4784888 (-) 288 WP_101423859.1 DUF1416 domain-containing protein -
  CXR04_RS20905 (CXR04_20905) - 4784926..4785768 (-) 843 WP_101423860.1 sulfurtransferase -
  CXR04_RS34925 - 4785938..4786078 (-) 141 WP_159072367.1 putative leader peptide -
  CXR04_RS20910 (CXR04_20910) - 4786296..4787024 (-) 729 WP_101423861.1 DUF2993 domain-containing protein -
  CXR04_RS20915 (CXR04_20915) - 4787122..4789005 (-) 1884 WP_101423862.1 hypothetical protein -
  CXR04_RS20920 (CXR04_20920) - 4789013..4789270 (-) 258 WP_101423863.1 MoaD/ThiS family protein -
  CXR04_RS20925 (CXR04_20925) rcrP 4789368..4791113 (+) 1746 WP_101423864.1 ABC transporter ATP-binding protein Regulator
  CXR04_RS20930 (CXR04_20930) rcrQ 4791223..4793061 (+) 1839 WP_101426506.1 ABC transporter ATP-binding protein Regulator
  CXR04_RS20935 (CXR04_20935) - 4793151..4793750 (+) 600 WP_101423865.1 Uma2 family endonuclease -
  CXR04_RS20940 (CXR04_20940) - 4793731..4794672 (-) 942 WP_101423866.1 alpha/beta fold hydrolase -
  CXR04_RS20945 (CXR04_20945) - 4794833..4795570 (+) 738 WP_101423867.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 581 a.a.        Molecular weight: 62702.89 Da        Isoelectric Point: 7.3741

>NTDB_id=218773 CXR04_RS20925 WP_101423864.1 4789368..4791113(+) (rcrP) [Streptomyces sp. CMB-StM0423]
MLVRILRAHLRPYRRDLGWIVALQLVATVTTLYLPTLNADIIDHGVIPGDNGYILRTGGWMIVFSVVQFCAAGCAVFLGA
RTATALGRDMRASVFDRVQSFSAREMAHFGAPSLITRTTNDVQQIQMLALMTFTMMVAAPIMCVGGIVMALNQDVPLTSL
LLVVVPAVGVVVTLIVRRMRPLFRSMQKRIDEVNRIMREQITGIRVIRAFVRDGHEQRRFGRANTDLMDVGVRAGRLLAL
LFPTPMLAVNLSSVAVVWFAAGRIDSGAMDVGALTAFLSYLMYILMSVMMATFMFMMIPRAEVCAERIQEVLDTESSVVP
PAAPVPAAAEPRERGRLDVRGVEFRYPGAEEPVLRDVDLEARPGRTTAVIGSTGSGKSTLLALVPRLFDATGGSVAVGGV
DVRDLDPAALALAIGYVPQKPYLFSGTVASNLRYGKPDATDEELWDALRTAQAADFVREMDGGLDAAVAQGGSNVSGGQR
QRLAIARALVHRPDIYLFDDSFSALDYATDAALRAALAGRLGDATVVIVAQRVATIRDADRIVVLDGGRVAGAGTHAELM
AANETYREIVLSQLTEKEAAA

Nucleotide


Download         Length: 1746 bp        

>NTDB_id=218773 CXR04_RS20925 WP_101423864.1 4789368..4791113(+) (rcrP) [Streptomyces sp. CMB-StM0423]
GTGCTCGTCCGAATCCTCCGCGCTCACCTGCGCCCGTACCGCCGGGACCTCGGCTGGATCGTGGCGCTGCAGCTCGTCGC
GACCGTGACGACCCTCTATCTCCCCACGCTCAACGCCGACATCATCGACCACGGCGTCATCCCCGGTGACAACGGCTACA
TCCTGCGCACCGGCGGCTGGATGATCGTCTTCAGCGTGGTGCAGTTCTGCGCGGCCGGCTGCGCCGTGTTCCTCGGCGCC
CGTACGGCCACCGCCCTCGGCCGGGACATGCGCGCCTCGGTCTTCGACCGGGTGCAGTCCTTCTCCGCCCGTGAGATGGC
CCACTTCGGCGCCCCGTCGCTCATCACGCGCACCACGAACGACGTGCAGCAGATCCAGATGCTCGCCCTGATGACGTTCA
CGATGATGGTCGCGGCGCCGATCATGTGCGTCGGCGGCATCGTCATGGCGCTCAACCAGGACGTGCCGCTGACGTCCCTG
CTGCTCGTCGTCGTGCCCGCGGTGGGCGTCGTCGTGACGCTGATCGTGCGCCGTATGCGCCCGCTGTTCCGCAGCATGCA
GAAGCGCATCGACGAGGTGAACCGGATCATGCGCGAGCAGATCACCGGCATCCGCGTCATCCGCGCCTTCGTCCGCGACG
GACACGAGCAGCGCCGCTTCGGCAGGGCGAACACCGACCTGATGGACGTGGGCGTACGGGCCGGGAGGCTGCTGGCGCTG
CTGTTCCCCACCCCGATGCTCGCGGTGAACCTGTCGAGCGTCGCCGTCGTCTGGTTCGCGGCCGGGCGGATCGACAGCGG
CGCCATGGACGTCGGTGCGCTCACGGCGTTCCTGTCCTACCTCATGTACATCCTCATGAGCGTGATGATGGCCACCTTCA
TGTTCATGATGATCCCGCGCGCGGAGGTCTGCGCCGAGCGGATCCAGGAGGTGCTGGACACCGAGTCGTCGGTCGTCCCG
CCCGCGGCTCCGGTGCCCGCGGCGGCCGAGCCGCGCGAGCGCGGCCGGCTCGACGTCCGCGGCGTCGAGTTCCGCTACCC
GGGCGCCGAGGAGCCGGTGCTCAGGGACGTCGACCTGGAGGCCCGGCCGGGGCGTACGACGGCGGTCATCGGCAGCACCG
GCAGCGGCAAGTCGACGCTGCTGGCGCTCGTGCCCCGGCTCTTCGACGCCACCGGGGGCAGCGTCGCGGTGGGCGGCGTG
GACGTACGGGACCTGGATCCGGCGGCGCTGGCGCTGGCCATCGGCTACGTGCCGCAGAAGCCGTACCTCTTCAGCGGCAC
CGTCGCCTCGAACCTCCGCTACGGCAAGCCCGACGCCACCGACGAGGAGCTGTGGGACGCGCTGCGCACCGCGCAGGCGG
CGGACTTCGTCCGGGAGATGGACGGCGGCCTCGACGCGGCCGTCGCGCAGGGCGGCTCGAACGTCTCGGGCGGCCAGCGG
CAGCGCCTGGCGATCGCCCGCGCGCTGGTGCACCGCCCCGACATCTACCTCTTCGACGACTCCTTCTCCGCCCTCGACTA
CGCCACGGACGCCGCCCTGCGCGCGGCCCTCGCGGGCCGGCTCGGGGACGCGACGGTCGTGATCGTCGCCCAGCGGGTCG
CGACGATCCGGGACGCGGACCGGATAGTGGTCCTGGACGGGGGCCGGGTGGCGGGCGCGGGGACGCACGCGGAGCTGATG
GCGGCGAACGAGACGTACCGCGAGATCGTGCTCTCGCAGCTCACCGAGAAGGAGGCGGCCGCATGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(20-288)

ABC transporter (ABC_tran)

(354-501)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.339

97.418

0.373